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NCBI C++ ToolKit: src/sample/app/serial/seqannot_splicer_util.cpp File Reference

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#define  ADDFLAG(flag)    if ((found_flag = find(fbegin,fend,#flag)) != fend) flags |= fSAMF_##flag;   #define  ADDFLAG(flag)    if ((found_flag = find(fbegin,fend,#flag)) != fend) flags |= fSIMF_##flag;   ◆ ADDFLAG [1/2] #define ADDFLAG (   flag )     if ((found_flag = find(fbegin,fend,#flag)) != fend) flags |= fSAMF_##flag; ◆ ADDFLAG [2/2] #define ADDFLAG (   flag )     if ((found_flag = find(fbegin,fend,#flag)) != fend) flags |= fSIMF_##flag; ◆ SContext ◆ TAnnotToSeqIdMap ◆ TAnnotToSeqIdMapCIter ◆ TAnnotToSeqIdMapIter ◆ TContextList ◆ TContextListIter ◆ TContextPtr ◆ TContextPtrStack ◆ TContextSeqIds ◆ TPosCont ◆ TPosContIter ◆ TPosContOb ◆ TPosContRef ◆ TSeqIdToAnnotMap ◆ TSeqIdToAnnotMapCIter ◆ TSeqIdToAnnotMapIter ◆ TSeqRefCont ◆ TSeqRefContIter ◆ TSeqRefContOb ◆ TSeqRefContRef ◆ AddSeqIdToCurrentContext() void AddSeqIdToCurrentContext ( TSeqRef  id ) ◆ ContextEnd() ◆ ContextEnter() void ContextEnter ( void  ) ◆ ContextInit() void ContextInit ( void  ) ◆ ContextLeave() void ContextLeave ( void  ) ◆ ContextStart() ◆ CurrentContextContainsSeqAnnots() void CurrentContextContainsSeqAnnots ( void  ) ◆ GetFormat() ◆ IsSeqAnnotChoiceSelected() [1/2] ◆ IsSeqAnnotChoiceSelected() [2/2] ◆ IsSeqIdChoiceSelected() [1/2] ◆ IsSeqIdChoiceSelected() [2/2] ◆ ProcessSeqEntryAnnot() ◆ ResetSeqEntryProcessing() void ResetSeqEntryProcessing ( void  ) ◆ s_DeleteContext() ◆ s_GetSeqAnnotChoiceMask()

Definition at line 550 of file seqannot_splicer_util.cpp.

References CSeq_annot_Base::CanGetData(), CSeq_annot_Base::C_Data::e_Align, CSeq_annot_Base::C_Data::e_Ftable, CSeq_annot_Base::C_Data::e_Graph, CSeq_annot_Base::C_Data::e_Ids, CSeq_annot_Base::C_Data::e_Locs, CSeq_annot_Base::C_Data::e_not_set, CSeq_annot_Base::C_Data::e_Seq_table, eUnknown, fSAMF_Align, fSAMF_Ftable, fSAMF_Graph, fSAMF_Ids, fSAMF_Locs, fSAMF_NotSet, fSAMF_Seq_table, CSeq_annot_Base::GetData(), CSeq_annot_Base::IsSetData(), NCBI_THROW, and CSeq_annot_Base::C_Data::Which().

Referenced by IsSeqAnnotChoiceSelected().

◆ s_GetSeqIdChoiceMask()

Definition at line 571 of file seqannot_splicer_util.cpp.

References CSeq_id_Base::e_Ddbj, CSeq_id_Base::e_Embl, CSeq_id_Base::e_Genbank, CSeq_id_Base::e_General, CSeq_id_Base::e_Gi, CSeq_id_Base::e_Gibbmt, CSeq_id_Base::e_Gibbsq, CSeq_id_Base::e_Giim, CSeq_id_Base::e_Gpipe, CSeq_id_Base::e_Local, CSeq_id_Base::e_Named_annot_track, CSeq_id_Base::e_not_set, CSeq_id_Base::e_Other, CSeq_id_Base::e_Patent, CSeq_id_Base::e_Pdb, CSeq_id_Base::e_Pir, CSeq_id_Base::e_Prf, CSeq_id_Base::e_Swissprot, CSeq_id_Base::e_Tpd, CSeq_id_Base::e_Tpe, CSeq_id_Base::e_Tpg, eUnknown, fSIMF_Ddbj, fSIMF_Embl, fSIMF_Genbank, fSIMF_General, fSIMF_Gi, fSIMF_Gibbmt, fSIMF_Gibbsq, fSIMF_Giim, fSIMF_Gpipe, fSIMF_Local, fSIMF_Named_annot_track, fSIMF_NotSet, fSIMF_Other, fSIMF_Patent, fSIMF_Pdb, fSIMF_Pir, fSIMF_Prf, fSIMF_Swissprot, fSIMF_Tpd, fSIMF_Tpe, fSIMF_Tpg, NCBI_THROW, and CSeq_id_Base::Which().

Referenced by IsSeqIdChoiceSelected().

◆ s_RemoveAnnot() ◆ s_SpliceAnnot() ◆ s_SpliceAnnotsForSeqId() ◆ SeqAnnotMapSeqId() void SeqAnnotMapSeqId ( TSeqRef  seqid_in_annot ) ◆ SeqAnnotSet_Pre() ◆ SetSeqAnnotChoiceMask() [1/2] ◆ SetSeqAnnotChoiceMask() [2/2] ◆ SetSeqIdChoiceMask() [1/2] ◆ SetSeqIdChoiceMask() [2/2] ◆ USING_SCOPE() [1/2] ◆ USING_SCOPE() [2/2] ◆ s_AnnotPos ◆ s_AnnotToSeqIdMap ◆ s_ContextPtrStack ◆ s_ContextSequence ◆ s_ContextSequenceIter ◆ s_CurrentContextPtr ◆ s_RootContextPtr ◆ s_SeqAnnotChoiceMask ◆ s_SeqIdChoiceMask ◆ s_SeqIdToAnnotMap

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