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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/seqalign__unit__test_8cpp_source.html below:

NCBI C++ ToolKit: src/objects/seq/unit_test/seqalign_unit_test.cpp Source File

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68  const string kFileName

(

"data/blastp_db.asn"

);

75

vector< pair<TSeqPos, TSeqPos> > gap_data;

76

gap_data.push_back(make_pair(0

U

,0

U

));

77

gap_data.push_back(make_pair(0

U

,0

U

));

78

gap_data.push_back(make_pair(1U,2U));

79

gap_data.push_back(make_pair(1U,2U));

80

gap_data.push_back(make_pair(1U,5U));

81

gap_data.push_back(make_pair(1U,5U));

82

gap_data.push_back(make_pair(2U,2U));

83

gap_data.push_back(make_pair(1U,1U));

84

gap_data.push_back(make_pair(1U,1U));

85

gap_data.push_back(make_pair(0

U

,0

U

));

89  TSeqPos

test_value = (*alignment)->GetNumGapOpenings();

90

BOOST_REQUIRE_EQUAL(gap_data[index].

first

, test_value);

91

test_value = (*alignment)->GetTotalGapCount();

92

BOOST_REQUIRE_EQUAL(gap_data[index].second, test_value);

99  const string kFileName

(

"data/tblastn_db.asn"

);

106

vector< pair<TSeqPos, TSeqPos> > gap_data;

107

gap_data.push_back(make_pair(0

U

,0

U

));

108

gap_data.push_back(make_pair(0

U

,0

U

));

112  TSeqPos

test_value = (*alignment)->GetNumGapOpenings();

113

BOOST_REQUIRE_EQUAL(gap_data[index].

first

, test_value);

static const char * kFileName

static DLIST_TYPE *DLIST_NAME() first(DLIST_LIST_TYPE *list)

unsigned int TSeqPos

Type for sequence locations and lengths.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define MSerial_AsnText

I/O stream manipulators –.

list< CRef< CSeq_align > > Tdata

const Tdata & Get(void) const

Get the member data.

std::istream & in(std::istream &in_, double &x_)

static void s_TestStdSegGaps(void)

BOOST_AUTO_TEST_CASE(TestDenseSegGaps)

Utility stuff for more convenient using of Boost.Test library.

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