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NCBI C++ ToolKit: src/algo/blast/unit_tests/api/seqalign_cmp.cpp File Reference

API to compare CSeq-aligns produced by BLAST. More...

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API to compare CSeq-aligns produced by BLAST.

Definition in file seqalign_cmp.cpp.

◆ s_CompareValues() ◆ s_GetAlignmentLengths()

Returns a pair containing the length of the aligned region in the query and the length of the aligned region in the subject.

Parameters
starts starting offsets vector. Even entries represent query offsets, odd entries represent subject offsets. [in] lengths represents the lengths of the aligned regions in the query and subject. [in]

Definition at line 295 of file seqalign_cmp.cpp.

References _ASSERT, i, and SeqAlign::kNumDimensions.

Referenced by CSeqAlignCmp::x_CompareOneAlign().

◆ s_PrintContainer()

template<class Container >

void s_PrintContainer ( ofstream &  out, const Container &  c  ) ◆ s_PrintTSeqAlignSet() ◆ s_ToString() [1/3]

template<>

string s_ToString ( double  value ) ◆ s_ToString() [2/3] ◆ s_ToString() [3/3] ◆ USING_SCOPE()

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