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NCBI C++ ToolKit: include/objmgr/impl/seq_vector_cvt_gen.hpp Source File

1 #ifndef SEQ_VECTOR_CVT_GEN__HPP 2 #define SEQ_VECTOR_CVT_GEN__HPP 37 template

<

class

DstIter,

class

SrcCont>

40  const

SrcCont& srcCont,

size_t

srcPos)

42  typename

SrcCont::const_iterator src = srcCont.begin() + srcPos;

43  for

( DstIter end(dst +

count

); dst != end; ++dst ) {

44  _ASSERT

(src >= srcCont.begin() && src < srcCont.end());

52 template

<

class

DstIter,

class

SrcCont>

55  const

SrcCont& srcCont,

size_t

srcPos,

58  typename

SrcCont::const_iterator src = srcCont.begin() + srcPos;

59  for

( DstIter end(dst +

count

); dst != end; ++dst ) {

60  _ASSERT

(src >= srcCont.begin() && src < srcCont.end());

63

*dst =

table

[c & 0xff];

68 template

<

class

DstIter,

class

SrcCont>

71  const

SrcCont& srcCont,

size_t

srcPos)

74  typename

SrcCont::const_iterator src = srcCont.begin() + srcPos;

75  for

( DstIter end(dst +

count

); dst != end; ++dst ) {

76  _ASSERT

(src > srcCont.begin() && src <= srcCont.end());

83 template

<

class

DstIter,

class

SrcCont>

86  const

SrcCont& srcCont,

size_t

srcPos,

90  typename

SrcCont::const_iterator src = srcCont.begin() + srcPos;

91  for

( DstIter end(dst +

count

); dst != end; ++dst ) {

92  _ASSERT

(src > srcCont.begin() && src <= srcCont.end());

94

*dst =

table

[c & 0xff];

99 template

<

class

DstIter,

class

SrcCont>

101  const

SrcCont& srcCont,

size_t

srcPos)

103  typename

SrcCont::const_iterator src = srcCont.begin() + srcPos / 2;

106  _ASSERT

(src >= srcCont.begin() && src < srcCont.end());

113  for

( DstIter end(dst + (

count

& ~1)); dst != end; dst += 2 ) {

114  _ASSERT

(src >= srcCont.begin() && src < srcCont.end());

117

*dst = (c >> 4) & 0x0f;

118

dst[1] = (c ) & 0x0f;

122  _ASSERT

(src >= srcCont.begin() && src < srcCont.end());

124

*dst = (c >> 4) & 0x0f;

129 template

<

class

DstIter,

class

SrcCont>

131  const

SrcCont& srcCont,

size_t

srcPos,

134  typename

SrcCont::const_iterator src = srcCont.begin() + srcPos / 2;

137  _ASSERT

(src >= srcCont.begin() && src < srcCont.end());

140

*dst =

table

[(c ) & 0x0f];

144  for

( DstIter end(dst + (

count

& ~1)); dst != end; dst += 2 ) {

145  _ASSERT

(src >= srcCont.begin() && src < srcCont.end());

148

*dst =

table

[(c >> 4) & 0x0f];

149

dst[1] =

table

[(c ) & 0x0f];

153  _ASSERT

(src >= srcCont.begin() && src < srcCont.end());

155

*dst =

table

[(c >> 4) & 0x0f];

160 template

<

class

DstIter,

class

SrcCont>

162  const

SrcCont& srcCont,

size_t

srcPos)

165  typename

SrcCont::const_iterator src = srcCont.begin() + srcPos / 2;

168  _ASSERT

(src >= srcCont.begin() && src < srcCont.end());

170

*dst = (c >> 4) & 0x0f;

174  for

( DstIter end(dst + (

count

& ~1)); dst != end; dst += 2 ) {

175  _ASSERT

(src > srcCont.begin() && src <= srcCont.end());

178

dst[1] = (c >> 4) & 0x0f;

182  _ASSERT

(src > srcCont.begin() && src <= srcCont.end());

189 template

<

class

DstIter,

class

SrcCont>

191  const

SrcCont& srcCont,

size_t

srcPos,

195  typename

SrcCont::const_iterator src = srcCont.begin() + srcPos / 2;

198  _ASSERT

(src >= srcCont.begin() && src < srcCont.end());

200

*dst =

table

[(c >> 4) & 0x0f];

204  for

( DstIter end(dst + (

count

& ~1)); dst != end; dst += 2 ) {

205  _ASSERT

(src > srcCont.begin() && src <= srcCont.end());

207

*dst =

table

[(c ) & 0x0f];

208

dst[1] =

table

[(c >> 4) & 0x0f];

212  _ASSERT

(src > srcCont.begin() && src <= srcCont.end());

214

*dst =

table

[(c ) & 0x0f];

219 template

<

class

DstIter,

class

SrcCont>

221  const

SrcCont& srcCont,

size_t

srcPos)

223  typename

SrcCont::const_iterator src = srcCont.begin() + srcPos / 4;

224  size_t

first_byte_pos = srcPos % 4;

225  if

( first_byte_pos ) {

227  _ASSERT

(src >= srcCont.begin() && src < srcCont.end());

230  if

( first_byte_pos <= 1 ) {

231

*dst = (c >> 4) & 0x03;

232  if

( --

count

== 0 )

return

;

235  if

( first_byte_pos <= 2 ) {

236

*dst = (c >> 2) & 0x03;

237  if

( --

count

== 0 )

return

;

244  for

( DstIter end = dst + (

count

& ~3); dst != end; dst += 4 ) {

245  _ASSERT

(src >= srcCont.begin() && src < srcCont.end());

248  char

c0 = char(c3 >> 6);

249  char

c1 = char(c3 >> 4);

250  char

c2 = char(c3 >> 2);

261  size_t

last_byte_count =

count

% 4;

262  if

( last_byte_count ) {

263  _ASSERT

(src >= srcCont.begin() && src < srcCont.end());

265

*dst = (c >> 6) & 0x03;

266  if

( last_byte_count >= 2 ) {

267

dst[1] = (c >> 4) & 0x03;

268  if

( last_byte_count >= 3 ) {

269

dst[2] = (c >> 2) & 0x03;

276 template

<

class

DstIter,

class

SrcCont>

278  const

SrcCont& srcCont,

size_t

srcPos,

281  typename

SrcCont::const_iterator src = srcCont.begin() + srcPos / 4;

282  size_t

first_byte_pos = srcPos % 4;

283  if

( first_byte_pos ) {

285  _ASSERT

(src >= srcCont.begin() && src < srcCont.end());

288  if

( first_byte_pos <= 1 ) {

289

*dst =

table

[(c >> 4) & 0x03];

290  if

( --

count

== 0 )

return

;

293  if

( first_byte_pos <= 2 ) {

294

*dst =

table

[(c >> 2) & 0x03];

295  if

( --

count

== 0 )

return

;

298

*dst =

table

[(c ) & 0x03];

302  for

( DstIter end = dst + (

count

& ~3); dst != end; dst += 4 ) {

303  _ASSERT

(src >= srcCont.begin() && src < srcCont.end());

306  char

c0 = char(c3 >> 6);

307  char

c1 = char(c3 >> 4);

308  char

c2 = char(c3 >> 2);

309

c0 =

table

[c0 & 0x03];

310

c1 =

table

[c1 & 0x03];

312

c2 =

table

[c2 & 0x03];

314

c3 =

table

[c3 & 0x03];

319  size_t

last_byte_count =

count

% 4;

320  if

( last_byte_count ) {

321  _ASSERT

(src >= srcCont.begin() && src < srcCont.end());

323

*dst =

table

[(c >> 6) & 0x03];

324  if

( last_byte_count >= 2 ) {

325

dst[1] =

table

[(c >> 4) & 0x03];

326  if

( last_byte_count >= 3 ) {

327

dst[2] =

table

[(c >> 2) & 0x03];

334 template

<

class

DstIter,

class

SrcCont>

336  const

SrcCont& srcCont,

size_t

srcPos)

339  typename

SrcCont::const_iterator src = srcCont.begin() + srcPos / 4;

340  size_t

first_byte_pos = srcPos % 4;

341  if

( first_byte_pos ) {

343  _ASSERT

(src >= srcCont.begin() && src < srcCont.end());

345  if

( first_byte_pos >= 3 ) {

346

*dst = (c >> 2) & 0x03;

347  if

( --

count

== 0 )

return

;

350  if

( first_byte_pos >= 2 ) {

351

*dst = (c >> 3) & 0x03;

352  if

( --

count

== 0 )

return

;

355

*dst = (c >> 6) & 0x03;

359  for

( DstIter end = dst + (

count

& ~3); dst != end; dst += 4 ) {

360  _ASSERT

(src > srcCont.begin() && src <= srcCont.end());

362  char

c1 = char(c0 >> 2);

363  char

c2 = char(c0 >> 4);

364  char

c3 = char(c0 >> 6);

375  size_t

last_byte_count =

count

% 4;

376  if

( last_byte_count ) {

377  _ASSERT

(src > srcCont.begin() && src <= srcCont.end());

380  if

( last_byte_count >= 2 ) {

381

dst[1] = (c >> 2) & 0x03;

382  if

( last_byte_count >= 3 ) {

383

dst[2] = (c >> 4) & 0x03;

390 template

<

class

DstIter,

class

SrcCont>

392  const

SrcCont& srcCont,

size_t

srcPos,

396  typename

SrcCont::const_iterator src = srcCont.begin() + srcPos / 4;

397  size_t

first_byte_pos = srcPos % 4;

398  if

( first_byte_pos ) {

400  _ASSERT

(src >= srcCont.begin() && src < srcCont.end());

402  if

( first_byte_pos >= 3 ) {

403

*dst =

table

[(c >> 2) & 0x03];

404  if

( --

count

== 0 )

return

;

407  if

( first_byte_pos >= 2 ) {

408

*dst =

table

[(c >> 4) & 0x03];

409  if

( --

count

== 0 )

return

;

412

*dst =

table

[(c >> 6) & 0x03];

416  for

( DstIter end = dst + (

count

& ~3); dst != end; dst += 4 ) {

417  _ASSERT

(src > srcCont.begin() && src <= srcCont.end());

419  char

c1 = char(c0 >> 2);

420  char

c2 = char(c0 >> 4);

421  char

c3 = char(c0 >> 6);

422

c0 =

table

[c0 & 0x03];

423

c1 =

table

[c1 & 0x03];

425

c2 =

table

[c2 & 0x03];

427

c3 =

table

[c3 & 0x03];

432  size_t

last_byte_count =

count

% 4;

433  if

( last_byte_count ) {

434  _ASSERT

(src > srcCont.begin() && src <= srcCont.end());

436

*dst =

table

[(c ) & 0x03];

437  if

( last_byte_count >= 2 ) {

438

dst[1] =

table

[(c >> 2) & 0x03];

439  if

( last_byte_count >= 3 ) {

440

dst[2] =

table

[(c >> 4) & 0x03];

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

<!DOCTYPE HTML >< html > n< header > n< title > PubSeq Gateway Help Page</title > n< style > n table

void copy_4bit(DstIter dst, size_t count, const SrcCont &srcCont, size_t srcPos)

void copy_2bit_reverse(DstIter dst, size_t count, const SrcCont &srcCont, size_t srcPos)

void copy_4bit_table(DstIter dst, size_t count, const SrcCont &srcCont, size_t srcPos, const char *table)

void copy_2bit_table(DstIter dst, size_t count, const SrcCont &srcCont, size_t srcPos, const char *table)

void copy_8bit_reverse(DstIter dst, size_t count, const SrcCont &srcCont, size_t srcPos)

void copy_8bit_table(DstIter dst, size_t count, const SrcCont &srcCont, size_t srcPos, const char *table)

void copy_2bit_table_reverse(DstIter dst, size_t count, const SrcCont &srcCont, size_t srcPos, const char *table)

void copy_4bit_reverse(DstIter dst, size_t count, const SrcCont &srcCont, size_t srcPos)

void copy_4bit_table_reverse(DstIter dst, size_t count, const SrcCont &srcCont, size_t srcPos, const char *table)

void copy_8bit_table_reverse(DstIter dst, size_t count, const SrcCont &srcCont, size_t srcPos, const char *table)

void copy_2bit(DstIter dst, size_t count, const SrcCont &srcCont, size_t srcPos)

void copy_8bit(DstIter dst, size_t count, const SrcCont &srcCont, size_t srcPos)


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