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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/seq__text__panel_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/widgets/seq_text/seq_text_panel.cpp Source File

33 #include <wx/choice.h> 34 #include <wx/stattext.h> 35 #include <wx/bitmap.h> 37 #include <wx/textctrl.h> 38 #include <wx/button.h> 98 #ifdef __WXOSX_COCOA__ 99

SetBackgroundStyle(wxBG_STYLE_COLOUR);

100

SetBackgroundColour(wxSystemSettings::GetColour(wxSYS_COLOUR_FRAMEBK));

103 

wxPanel::Create( parent,

id

, pos,

size

, style );

108

GetSizer()->SetSizeHints(

this

);

156

wxBoxSizer* itemBoxSizer2 =

new

wxBoxSizer(wxVERTICAL);

157

itemPanel1->SetSizer(itemBoxSizer2);

159

wxBoxSizer* itemBoxSizer3 =

new

wxBoxSizer(wxHORIZONTAL);

160

itemBoxSizer2->Add(itemBoxSizer3, 0, wxALIGN_LEFT|wxALL, 5);

162

wxStaticText* itemStaticText4 =

new

wxStaticText( itemPanel1, wxID_STATIC,

_

(

"Find"

), wxDefaultPosition, wxDefaultSize, 0 );

163

itemBoxSizer3->Add(itemStaticText4, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

165

wxTextCtrl* itemTextCtrl5 =

new

wxTextCtrl( itemPanel1,

ID_TEXTCTRL1

, wxEmptyString, wxDefaultPosition, wxDefaultSize, 0 );

166

itemBoxSizer3->Add(itemTextCtrl5, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

168  m_BwdButton

=

new

wxButton( itemPanel1,

ID_BUTTON

,

_

(

"Bwd"

), wxDefaultPosition, wxDefaultSize, 0 );

169

itemBoxSizer3->Add(

m_BwdButton

, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

172

itemBoxSizer3->Add(

m_FwdButton

, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

176

itemBoxSizer3->Add(

m_StopButton

, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

178

wxStaticText* itemStaticText9 =

new

wxStaticText( itemPanel1, wxID_STATIC,

_

(

"Current Position:"

), wxDefaultPosition, wxDefaultSize, 0 );

179

itemBoxSizer3->Add(itemStaticText9, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

181  m_MousePos

=

new

wxStaticText( itemPanel1, wxID_STATIC, wxEmptyString, wxDefaultPosition, wxSize(itemPanel1->ConvertDialogToPixels(wxSize(100, -1)).x, -1), wxNO_BORDER );

182

itemBoxSizer3->Add(

m_MousePos

, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

184

wxStaticText* itemStaticText11 =

new

wxStaticText( itemPanel1, wxID_STATIC,

_

(

"Show"

), wxDefaultPosition, wxDefaultSize, 0 );

185

itemBoxSizer3->Add(itemStaticText11, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

187

wxArrayString itemChoice12Strings;

188

itemChoice12Strings.Add(

_

(

"None"

));

189

itemChoice12Strings.Add(

_

(

"Gene"

));

190

itemChoice12Strings.Add(

_

(

"CDS"

));

191

itemChoice12Strings.Add(

_

(

"mRNA"

));

192

itemChoice12Strings.Add(

_

(

"misc_RNA"

));

193

itemChoice12Strings.Add(

_

(

"STS"

));

194

wxChoice* itemChoice12 =

new

wxChoice( itemPanel1,

ID_CHOICE1

, wxDefaultPosition, wxDefaultSize, itemChoice12Strings, 0 );

195

itemChoice12->SetStringSelection(

_

(

"None"

));

196

itemBoxSizer3->Add(itemChoice12, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

206

wxChoice* choice = (wxChoice*)FindWindow(

ID_CHOICE1

);

209  case

objects::CSeqFeatData::eSubtype_gene:

210

choice->SetSelection (1);

212  case

objects::CSeqFeatData::eSubtype_cdregion:

213

choice->SetSelection (2);

215  case

objects::CSeqFeatData::eSubtype_mRNA:

216

choice->SetSelection (3);

218  case

objects::CSeqFeatData::eSubtype_misc_RNA:

219

choice->SetSelection (4);

221  case

objects::CSeqFeatData::eSubtype_STS:

222

choice->SetSelection (5);

268  const CSeq_id

*

id

=

dynamic_cast<const CSeq_id

*

>

(

object

.object.GetPointer());

273  id

->GetLabel(&

str

);

282  const CSeq_entry

* seq_entry =

dynamic_cast<const CSeq_entry

*

>

(

object

.object.GetPointer());

296  const CSeq_loc

* loc =

dynamic_cast<const CSeq_loc

*

>

(

object

.object.GetPointer());

297  if

(loc && loc->

GetId

()) {

298  auto

handle =

object

.scope->GetBioseqHandle(*loc->

GetId

());

322

objects::CSeqFeatData::ESubtype subtype = objects::CSeqFeatData::eSubtype_bad;

323  switch

(event.GetInt()) {

325

subtype = objects::CSeqFeatData::eSubtype_gene;

328

subtype = objects::CSeqFeatData::eSubtype_cdregion;

331

subtype = objects::CSeqFeatData::eSubtype_mRNA;

334

subtype = objects::CSeqFeatData::eSubtype_misc_RNA;

337

subtype = objects::CSeqFeatData::eSubtype_STS;

376  struct

SSeqSearchInput {

381

SSeqSearchInput(

const string

& search_term,

bool

forward,

CSeqTextWidget

* widget)

382

: m_Term(search_term), m_Forward(forward), m_TextWidget(widget) {}

385  struct

SSeqSearchOutput {

430  if

(

input

.m_Forward) {

455  catch

(

const

std::exception& e) {

466  const

SSeqSearchOutput& res = jobResult->

GetData

();

481  string

err_msg =

"Failed: "

;

482  if

(!errMsg.empty()) {

486

err_msg +=

"Unknown fatal error"

;

497

wxTextCtrl* find = (wxTextCtrl*)FindWindow(

ID_TEXTCTRL1

);

500  if

(

value

.empty()) {

510

(

this

,

input

,

s_SearchInSeqText

,

"CSeqTextSearchJob"

,

"Search for a string in Sequence Text View"

));

CSeqTextDataSource implements Adapter design pattern.

void FindSequenceFragmentList(const string &fragment, CSeqTextDefs::TSeqPosVector &locations, ICanceled *cancel)

CSeqTextDefs::TSeqPosVector m_FoundList

const CSeqTextSearch & GetTextSearchData() const

void SetTextSearchData(const CSeqTextSearch &data)

virtual TSeqPos STG_GetSequenceByWindow(int x, int y)

void ResetTextSearchData()

virtual void OnJobFailed(const string &, CJobAdapter &adapter)

void Init()

Initialises member variables.

virtual void OnJobResult(CObject *result, CJobAdapter &adapter)

wxIcon GetIconResource(const wxString &name)

Retrieves icon resources.

CSeqTextWidget * m_SeqTextWidget

static bool ShowToolTips()

Should we show tooltips?

~CSeqTextPanel()

Destructor.

void OnFeatureTypeSelected(wxCommandEvent &event)

wxEVT_COMMAND_CHOICE_SELECTED event handler for ID_CHOICE1

CRef< CJobAdapter > m_JobAdapter

virtual void STWH_ReportMouseOverPos(TSeqPos pos)

void OnStopClick(wxCommandEvent &event)

bool InitObject(SConstScopedObject &object)

wxBitmap GetBitmapResource(const wxString &name)

Retrieves bitmap resources.

void CreateControls()

Creates the controls and sizers.

CRef< CSeqTextDataSource > m_DataSource

void OnFindBwdClick(wxCommandEvent &event)

@begin CSeqTextPanel event handler declarations

bool Create(wxWindow *parent, wxWindowID id=ID_CSEQTEXTPANEL, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(400, 300), long style=wxTAB_TRAVERSAL)

Creation.

void x_RestoreButtonStates()

void OnFindFwdClick(wxCommandEvent &event)

wxEVT_COMMAND_BUTTON_CLICKED event handler for ID_BUTTON1

CSeqTextPanel()

Constructors.

void x_StartSearch(bool forward)

wxStaticText * m_MousePos

void SetHost(ISeqTextWidgetHost *pHost)

void UpdateLastSourcePos()

virtual CSeqTextDataSource * GetDS()

void ScrollToPosition(TSeqPos pos, bool notify=true)

int GetCaseFeatureSubtype()

virtual void SetDataSource(CSeqTextDataSource &ds)

void ChooseCaseFeature(objects::CSeqFeatData::ESubtype subtype)

Interface for testing cancellation request in a long lasting operation.

static SQLCHAR output[256]

static const char * str(char *buf, int n)

unsigned int TSeqPos

Type for sequence locations and lengths.

#define LOG_POST(message)

This macro is deprecated and it's strongly recomended to move in all projects (except tests) to macro...

void Error(CExceptionArgs_Base &args)

const string & GetMsg(void) const

Get message string.

virtual const char * what(void) const noexcept

Standard report (includes full backlog).

void Info(CExceptionArgs_Base &args)

EDialogReturnValue NcbiInfoBox(const string &message, const string &title="Info")

specialized Message Box function for reporting general information messages

void NcbiErrorBox(const string &message, const string &title="Error")

specialized Message Box function for reporting critical errors

void GetLabel(string *label, ELabelType type=eDefault, TLabelFlags flags=fLabel_Default) const

Append a label for this Seq-id to the supplied string.

const CSeq_id * GetId(void) const

Get the id of the location return NULL if has multiple ids or no id at all.

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

virtual bool IsCanceled(void) const =0

static string IntToString(int value, TNumToStringFlags flags=0, int base=10)

Convert int to string.

static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive equality of a substring with another string.

static string TruncateSpaces(const string &str, ETrunc where=eTrunc_Both)

Truncate whitespace in a string.

bool IsLocal(void) const

Check if variant Local is selected.

const struct ncbi::grid::netcache::search::fields::SIZE size

const GenericPointer< typename T::ValueType > T2 value

static bool s_SearchInSeqText(SSeqSearchInput &input, SSeqSearchOutput &output, string &error, ICanceled &canceled)

void ReportIDError(const string &id_label, bool is_local, const string &title="Error message")

wxString ToWxString(const string &s)

string ToStdString(const wxString &s)


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