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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/seq__match_8cpp_source.html below:

NCBI C++ ToolKit: src/algo/sequence/seq_match.cpp Source File

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45  char A

= 1,

C

= 2,

G

= 4,

T

= 8;

94  throw

runtime_error(

string

(

"couldn't covert "

) +

in

+

95  " to ncbi8na: invalid IUPAC code "

);

104  out

.resize(

in

.size());

105  for

(

unsigned int i

= 0;

i

<

in

.length();

i

++) {

113  static const char

sc_table[16] = {

114

0x00, 0x08, 0x04, 0x0c, 0x02, 0x0a, 0x06, 0x0e,

115

0x01, 0x09, 0x05, 0x0d, 0x03, 0x0b, 0x07, 0x0f

117  return

sc_table[

in

& 0x0f ];

123

reverse(seq.begin(), seq.end());

static char IupacToNcbi8na(char in)

stuff for dealing with ncbi8na.

static void CompNcbi8na(string &seq8na)

complement an ncbi8na sequence in place

Include a standard set of the NCBI C++ Toolkit most basic headers.

std::ofstream out("events_result.xml")

main entry point for tests

#define NON_CONST_ITERATE(Type, Var, Cont)

Non constant version of ITERATE macro.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

std::istream & in(std::istream &in_, double &x_)

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