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NCBI C++ ToolKit: src/algo/winmask/seq_masker_util.cpp Source File

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ncbi::TMaskedQueryRegions mask

static Uint1 BitCount(Uint4 mask, Uint1 bit_value=1)

Count the bits with given value in a given bit pattern.

static Uint4 reverse_complement(Uint4 seq, Uint1 size)

Reverse complement of a unit.

uint8_t Uint1

1-byte (8-bit) unsigned integer

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

const struct ncbi::grid::netcache::search::fields::SIZE size

static Uint4 letter(char c)


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