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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/seq__masker__uset__simple_8cpp_source.html below:

NCBI C++ ToolKit: src/algo/winmask/seq_masker_uset_simple.cpp Source File

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48  case eBadOrder

:

return "bad unit order"

;

61

<<

" ; adding "

<<

hex

<< unit;

65  units

.push_back( unit );

78

= lower_bound(

units

.begin(),

units

.end(), unit );

80  if

( res ==

units

.end() || *res != unit )

Exceptions that CSeqMaskerUsetSimple might throw.

virtual const char * GetErrCodeString() const override

Get a description string for this exception.

@ eSizeMismatch

When adding data in bulk (using add_info( vector, vector )), parameter vectors sizes are not equal.

@ eBadOrder

Units are being appended out of order.

Uint4 get_info(Uint4 unit) const

Lookup the count value for a given unit.

void add_info(Uint4 unit, Uint4 count)

Add information about the given unit.

static Uint4 reverse_complement(Uint4 seq, Uint1 size)

Reverse complement of a unit.

TErrCode GetErrCode(void) const

Get error code.

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

virtual const char * GetErrCodeString(void) const

Get error code interpreted as text.

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static void hex(unsigned char c)


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