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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/seq__masker__ostat__ascii_8cpp_source.html below:

NCBI C++ ToolKit: src/algo/winmask/seq_masker_ostat_ascii.cpp Source File

41 #define STAT_FMT_COMPONENT_NAME "windowmasker-statistics-format-version" 42 #define STAT_FMT_VER_MAJOR 1 43 #define STAT_FMT_VER_MINOR 1 44 #define STAT_FMT_VER_PATCH 0 45 #define STAT_FMT_VER_PFX "ascii " 62  case eBadOrder

:

return "bad unit order"

;

69  const string

& name,

string const

&

metadata

)

91  static Uint4

punit = 0;

93  if

( unit != 0 && unit <= punit )

96

ostr <<

"current unit "

<<

hex

<< unit <<

"; " 97

<<

"previous unit "

<<

hex

<< punit;

102  counts

.push_back( std::make_pair( unit,

count

) );

117  for

(

size_t i

( 0 );

i

<

counts

.size(); ++

i

) {

119

<< dec <<

counts

[

i

].second <<

'\n'

;

124  for

(

size_t i

( 0 );

i

<

comments

.size(); ++

i

) {

129

out_stream << '>

' << PARAMS[0] << ' ' << pvalues[0] << '\n'; 130  out_stream << '

>

' << PARAMS[1] << ' ' << pvalues[1] << '\n'; 131  out_stream << '

>

' << PARAMS[2] << ' ' << pvalues[2] << '\n'; 132  out_stream << '

>

' << PARAMS[3] << ' ' << pvalues[3] << '\n';

CNcbiOstrstreamToString class helps convert CNcbiOstrstream to a string Sample usage:

Exceptions that CSeqMaskerOstatAscii might throw.

virtual const char * GetErrCodeString() const override

Get a description string for this exception.

@ eBadOrder

Unit information is not added in ascending order of units.

std::vector< std::string > comments

Set of comments to print in the end of the stats file.

virtual void doFinalize()

Write data to output file.

virtual ~CSeqMaskerOstatAscii()

Object destructor.

virtual void doSetComment(const string &msg)

Prints msg as a comment line in the output file.

static CSeqMaskerVersion FormatVersion

Format version.

CSeqMaskerOstatAscii(const string &name, string const &metadat)

Object constructor.

virtual void doSetUnitCount(Uint4 unit, Uint4 count)

Output a line with information about the given unit count.

Base class for computing and saving unit counts data.

Uint1 unit_size

unit size

string metadata

metadata string

vector< pair< Uint4, Uint4 > > counts

Unit counts.

CNcbiOstream & out_stream

Refers to the C++ stream that should be used to write out the unit counts data.

string FormatMetaData() const

Combine version data and metadata into a single string.

Include a standard set of the NCBI C++ Toolkit most basic headers.

TErrCode GetErrCode(void) const

Get error code.

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

virtual const char * GetErrCodeString(void) const

Get error code interpreted as text.

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

IO_PREFIX::ofstream CNcbiOfstream

Portable alias for ofstream.

IO_PREFIX::ostream CNcbiOstream

Portable alias for ostream.

static void hex(unsigned char c)

constexpr bool empty(list< Ts... >) noexcept

#define STAT_FMT_COMPONENT_NAME

#define STAT_FMT_VER_MAJOR

#define STAT_FMT_VER_PATCH

#define STAT_FMT_VER_MINOR

static SLJIT_INLINE sljit_ins msg(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

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