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NCBI C++ ToolKit: src/algo/winmask/seq_masker_ostat.cpp Source File

;

STAT_ALGO_COMPONENT_NAME,

std::ostringstream os;

<<

<< t_low <<

<<

<< t_high;

std::ostringstream oss;

th_formatted = oss.str();

sz += th_formatted.size() + 1;

os.write( (

*)&sz,

( sz ) );

os.write( s1.c_str(), s1.size() );

os.write( &zero, 1 );

os.write( s2.c_str(), s2.size() );

os.write( &zero, 1 );

os.write( s3.c_str(), s3.size() );

os.write( &zero, 1 );

os.write( s4.c_str(), s4.size() );

os.write( &zero, 1 );

( !th_formatted.empty() )

os.write( th_formatted.c_str(), th_formatted.size() );

os.write( &zero, 1 );

std::ostringstream os;

os <<

<<

<<

<<

[

] << endl;

ostr <<

<<

;

ostr <<

<<

;

ostr <<

<<

;

ostr <<

<<

;

CNcbiOstrstreamToString class helps convert CNcbiOstrstream to a string Sample usage:

Exceptions that CSeqMaskerOstat can throw.

virtual const char * GetErrCodeString() const override

Get a description string for this exception.

@ eBadState

Operation can not be performed in the current state.

static CSeqMaskerVersion StatAlgoVersion

Version of the statistics generation algorithm.

static char const * STAT_ALGO_COMPONENT_NAME

virtual CSeqMaskerVersion const & GetStatFmtVersion() const =0

Get actual counts format version.

std::vector< double > count_map

string FormatParameters() const

Format algorithm parameters into a string.

Uint1 unit_size

unit size

enum CSeqMaskerOstat::@33 state

string metadata

metadata string

virtual void doSetUnitSize(Uint4 us)

Uint4 max_count

information about counts and corresponding pct cutoffs

void setUnitCount(Uint4 unit, Uint4 count)

Add count value for a particular unit.

void WriteBinMetaData(std::ostream &os) const

Write metadata in binary format.

CSeqMaskerVersion fmt_gen_algo_ver

version of the algorithm used to generate counts

void finalize()

Perform any final tasks required to generate unit counts in the particular format.

void setParam(const string &name, Uint4 value)

Set a value of a WindowMasker parameter.

virtual void doSetParam(const string &, Uint4)

void setUnitSize(Uint1 us)

Set the unit size value.

string FormatMetaData() const

Combine version data and metadata into a single string.

virtual void doFinalize()

virtual void doSetUnitCount(Uint4, Uint4)=0

virtual std::string Print() const

Print version information.

TErrCode GetErrCode(void) const

Get error code.

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

virtual const char * GetErrCodeString(void) const

Get error code interpreted as text.

uint8_t Uint1

1-byte (8-bit) unsigned integer

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

const GenericPointer< typename T::ValueType > T2 value

#define STAT_ALGO_VER_PATCH

#define STAT_ALGO_VER_MAJOR

#define STAT_ALGO_VER_MINOR

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