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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/seq__id__mapper_8cpp_source.html below:

NCBI C++ ToolKit: src/objects/seq/seq_id_mapper.cpp Source File

( !ret || ret->ReferencedOnlyOnce() ) {

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do_not_create?

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.FindOrCreate(

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<<

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virtual bool HaveReverseMatch(const CSeq_id_Handle &id) const

virtual bool HaveMatch(const CSeq_id_Handle &id) const

virtual void FindReverseMatch(const CSeq_id_Handle &id, TSeq_id_MatchList &id_list)

virtual bool Match(const CSeq_id_Handle &h1, const CSeq_id_Handle &h2) const

virtual void FindMatch(const CSeq_id_Handle &id, TSeq_id_MatchList &id_list) const

static void Initialize(CSeq_id_Mapper *mapper, vector< CRef< CSeq_id_Which_Tree > > &v)

virtual bool IsBetterVersion(const CSeq_id_Handle &h1, const CSeq_id_Handle &h2) const

std::ofstream out("events_result.xml")

main entry point for tests

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

CSeq_id_Handle GetGiHandle(TGi gi)

Get seq-id handle.

bool x_IsBetter(const CSeq_id_Handle &h1, const CSeq_id_Handle &h2)

CSeq_id_Which_Tree & GetTree(void) const

bool x_Match(const CSeq_id_Handle &h1, const CSeq_id_Handle &h2)

bool HaveMatchingHandles(const CSeq_id_Handle &id)

Get the list of matching handles, do not create new handles.

bool HaveReverseMatch(const CSeq_id_Handle &id)

void GetReverseMatchingHandles(const CSeq_id_Handle &id, TSeq_id_HandleSet &h_set)

void GetMatchingHandlesStr(string sid, TSeq_id_HandleSet &h_set)

Get the list of string-matching handles, do not create new handles.

CConstRef< CSeq_id_Info, CSeq_id_InfoLocker > m_Info

CSeq_id_Which_Tree & x_GetTree(CSeq_id::E_Choice type)

vector< CRef< CSeq_id_Which_Tree > > TTrees

size_t Dump(CNcbiOstream &out, EDumpDetails details=eDumpTotalBytes) const

CSeq_id_Handle GetHandle(const CSeq_id &id, bool do_not_create=false)

virtual ~CSeq_id_Mapper(void)

void GetMatchingHandles(const CSeq_id_Handle &id, TSeq_id_HandleSet &h_set)

void Reset(void)

Reset reference object.

TObjectType * Release(void)

Release a reference to the object and return a pointer to the object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

IO_PREFIX::ostream CNcbiOstream

Portable alias for ostream.

E_Choice

Choice variants.

@ e_Gi

GenInfo Integrated Database.

@ e_not_set

No variant selected.

Multi-threading – mutexes; rw-locks; semaphore.

static void s_ResetInstance(TInstance *instance)

static TInstance * s_Instance

DEFINE_STATIC_FAST_MUTEX(s_InstanceMutex)

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