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NCBI C++ ToolKit: include/objmgr/seq_graph_handle.hpp Source File

<

Handle>

<

Handle>

<

Handle>

IsSetTitle(

)

;

&

(

)

;

IsSetComment(

)

;

& GetComment(

)

;

IsSetLoc(

)

;

IsSetTitle_x(

)

;

& GetTitle_x(

)

;

IsSetTitle_y(

)

;

& GetTitle_y(

)

;

IsSetComp(

)

;

IsSetA(

)

;

GetA(

)

;

IsSetB(

)

;

GetB(

)

;

GetNumval(

)

;

IsRemoved(

)

;

Remove(

)

;

Replace(

& new_obj)

;

Update(

)

;

& x_GetSeq_graph(

)

;

x_RealRemove(

)

;

x_RealReplace(

& new_obj)

;

: m_AnnotIndex(eNull)

User-defined methods of the data storage class.

unsigned int TSeqPos

Type for sequence locations and lengths.

NCBI_XOBJUTIL_EXPORT string GetTitle(const CBioseq_Handle &hnd, TGetTitleFlags flags=0)

const CSeq_annot_Handle & GetAnnot(void) const

Get an annotation handle for the current seq-graph.

bool IsSetComp(void) const

bool IsSetTitle_x(void) const

const string & GetComment(void) const

CSeq_annot_Handle m_Annot

TSeqPos GetNumval(void) const

const CSeq_graph & x_GetSeq_graph(void) const

bool IsSetComment(void) const

const CSeq_loc & GetLoc(void) const

const CSeq_graph::TGraph & GetGraph(void) const

bool IsSetTitle_y(void) const

const string & GetTitle_y(void) const

bool IsSetLoc(void) const

DECLARE_OPERATOR_BOOL(m_Annot &&m_AnnotIndex !=eNull &&!IsRemoved())

TSeqPos GetComp(void) const

bool IsSetTitle(void) const

CScope & GetScope(void) const

Get scope this handle belongs to.

const string & GetTitle_x(void) const

const string & GetTitle(void) const

CScope & GetScope(void) const

Get scope this handle belongs to.

int32_t Int4

4-byte (32-bit) signed integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

#define NCBI_XOBJMGR_EXPORT

bool IsSetComp(void) const

compression (residues/value) Check if a value has been assigned to Comp data member.

bool IsSetB(void) const

display = (a x value) + b Check if a value has been assigned to B data member.

bool IsSetLoc(void) const

region this applies to Check if a value has been assigned to Loc data member.

bool IsSetComment(void) const

Check if a value has been assigned to Comment data member.

bool IsSetA(void) const

for scaling values Check if a value has been assigned to A data member.

const TGraph & GetGraph(void) const

Get the Graph member data.

const TTitle & GetTitle(void) const

Get the Title member data.

TB GetB(void) const

Get the B member data.

const TTitle_x & GetTitle_x(void) const

Get the Title_x member data.

const TTitle_y & GetTitle_y(void) const

Get the Title_y member data.

const TLoc & GetLoc(void) const

Get the Loc member data.

TNumval GetNumval(void) const

Get the Numval member data.

TA GetA(void) const

Get the A member data.

bool IsSetTitle(void) const

Check if a value has been assigned to Title data member.

bool IsSetTitle_x(void) const

title for x-axis Check if a value has been assigned to Title_x data member.

const TComment & GetComment(void) const

Get the Comment member data.

bool IsSetTitle_y(void) const

Check if a value has been assigned to Title_y data member.

TComp GetComp(void) const

Get the Comp member data.

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.

int GetLoc(const string &acc, const string &pat, CSeq_loc &loc, CScope &scope)

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