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NCBI C++ ToolKit: include/gui/widgets/seq_graphic/seq_glyph.hpp Source File

wxContextMenuEvent;

OnLeftDblClick(

&

);

OnContextMenu(wxContextMenuEvent& event);

Update(

);

GetRange(

)

;

SetSelected(

flag);

LessBySeqPos(

& obj)

;

LessByPos(

& obj)

;

LessBySeqSize(

& obj)

;

LessBySize(

& obj)

;

IsSelected()

;

IsHighlighted()

;

* GetParent(

)

;

ENeighbours GetNeighbours()

;

SetHighlighted(

flag);

SetHighlightsColor(

&hl_color);

SetHighlightsColor(

&hl_color_str);

SetPos(

& upper_left);

SetNeighbours(ENeighbours neighbours);

SetRender(IGlyphRenderer* renderer);

SetTearline(

Tearline);

GetTearline()

;

(

& sTearlineText) { m_sTearlineText = sTearlineText; }

(

cur_row) { m_RowNumber = cur_row; }

GetFadeFactor()

;

x_DrawHighlight()

;

x_DrawInnerLabels(

base,

&

,

&

,

& font,

side_label_visible,

inside_only, vector<TModelRange> *labels_ranges =

,

* interval =

,

XOR_mode =

)

;

x_DrawException()

;

x_OnLayoutChanged();

x_Parent2Local(

& rect)

;

x_Visible_V()

;

x_IntersectVisible(

& SeqRange,

& from,

& to)

;

visitor->

(

);

.GetFrom() <

.GetFrom() ||

(

.GetFrom() ==

.GetFrom() &&

.GetTo() <

.GetTo());

{

(p.

(), p.

()); }

{

= upper_left; }

l < x && r > x && t < y && b > y;

fade_factor = 1.0;

fade_factor =

(0.0f, fade_factor);

CRenderingContext offers the basic context and utility methods for rendering layout objects in featur...

class CRgbaColor provides a simple abstraction for managing colors.

Layout renderer interface.

virtual void Draw(const CSeqGlyph *) const =0

virtual ~IGlyphRenderer()

class CSeqGlyph defines an interface that wraps a rectilinear abstract object.

void SetHighlightsColor(const CRgbaColor &hl_color)

string GetTearlineText() const

ENeighbours m_Neighbours

Indicates whether the glyph has neighbours.

CRenderingContext * m_Context

the rendering context

virtual string GetPName() const

persistent name of the glyph should not depend on the instance of the glyph, but should uniquely refl...

TModelUnit m_Width

object width

void x_Parent2Local(TModelPoint &pnt) const

Transform the coordiante from parent coord. to local coord.

void SetRowNum(size_t cur_row)

virtual void SetHeight(TModelUnit h)

virtual void SetHideLabel(bool)

Force to hide label.

virtual bool IsClickable() const

Query if this glyph is clickable.

const CRenderingContext * GetRenderingContext() const

Get the rendering context.

bool LessBySeqSize(const CSeqGlyph &obj) const

compare this object to another, based on sequence size.

virtual TModelUnit GetRight() const

virtual void x_Draw() const =0

The default renderer for this layout object.

const TModelPoint & GetPos() const

static bool PointInRect(const TModelPoint &p, const TModelRect &rc)

TModelPoint m_Pos

upper left corner position in parent coord

CSeqGlyph * SetParent(void)

bool IsIn(const TModelPoint &p) const

Hit test for points in PARENT COORD.

virtual void SetWidth(TModelUnit w)

void SetTearline(size_t Tearline)

tearline factor – used to limit a list of glyphs

virtual TSeqRange GetRange(void) const

get the total range of this object.

CSeqGlyph * m_Parent

parent/child relationships for this feature

virtual void SetLeft(TModelUnit l)

virtual TModelUnit GetTop() const

void SetRender(IGlyphRenderer *renderer)

set customized renderer for this layout objects.

virtual TModelUnit GetHeight() const

bool LessByPos(const CSeqGlyph &obj) const

compare this object to another, based on glyph geometry position.

virtual bool LessBySeqPos(const CSeqGlyph &obj) const

compare this object to another based on glyph sequence position.

unique_ptr< CRgbaColor > m_HighlightsColor

Highlight color.

float GetFadeFactor() const

virtual void SetTop(TModelUnit b)

void SetNeighbours(ENeighbours neighbours)

TModelUnit m_Height

object height

virtual bool Accept(IGlyphVisitor *visitor)

Interface for accepting an IGlyphVisitor.

virtual bool HasSideLabel() const

Query if there is label and label is on the side.

int m_Level

shows how deep is the glyph in an hierarchy (0 being closer to root, -1 undefined)

size_t GetTearline() const

CRgbaColor * GetHighlightsColor() const

size_t GetVisible() const

ENeighbours GetNeighbours() const

virtual bool SetSelected(bool flag)

Select or deselect this glyph.

void x_Local2World(TModelPoint &p) const

Transform the coordiantes from local coord. to world coord.

virtual TModelUnit GetWidth() const

CIRef< IGlyphRenderer > m_Renderer

user-defined renderer

virtual void SetPos(const TModelPoint &upper_left)

virtual void GetHTMLActiveAreas(TAreaVector *) const

Get html active areas.

virtual void x_UpdateBoundingBox()=0

Update the bounding box assuming children's sizes are fixed if any.

void GetPosInWorld(TModelPoint &pos) const

Get top left position in world coordinate.

void SetVisible(size_t v)

virtual TModelUnit GetLeft() const

TModelRect GetModelRect() const

get the bounding box.

vector< CHTMLActiveArea > TAreaVector

void SetHighlighted(bool flag)

void x_World2Local(TModelPoint &p) const

Transform the coordiante from world coord. to local coord.

bool LessBySize(const CSeqGlyph &obj) const

compare this object to another, based on geometry size.

virtual TModelUnit GetBottom() const

void SetTearlineText(const string &sTearlineText)

tearline text – if set, is appended to the glyph name (does not naffect processing otherwise)

const CSeqGlyph * GetParent(void) const

list< CRef< CSeqGlyph > > TObjects

list< CConstRef< CSeqGlyph > > TConstObjects

void SetRenderingContext(CRenderingContext *context)

Set the rendering context.

bool IsHighlighted() const

IGlyphDialogHost An interface used for handling issues related to any dialog pops up that requires so...

virtual void PostDialogShow()=0

Post-processing after showing a dialog.

virtual void PreDialogShow()=0

Prepare for showing a dialog.

virtual ~IGlyphDialogHost()

Visitor interface for applying any potential actions or algorithms.

virtual bool Visit(CSeqGlyph *glyph)=0

The NCBI C++ standard methods for dealing with std::string.

unsigned int TSeqPos

Type for sequence locations and lengths.

void swap(NCBI_NS_NCBI::pair_base_member< T1, T2 > &pair1, NCBI_NS_NCBI::pair_base_member< T1, T2 > &pair2)

void Offset(T d_x, T d_y)

CGlRect< TModelUnit > TModelRect

vector< CConstRef< CObject > > TConstObjects

TSeqPos GetLength(const CSeq_id &id, CScope *scope)

Get sequence length if scope not null, else return max possible TSeqPos.

position_type GetLength(void) const

CRange< TSeqPos > TSeqRange

typedefs for sequence ranges

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_GUIWIDGETS_SEQGRAPHIC_EXPORT

static const char label[]

Defines to provide correct exporting from DLLs in Windows.

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.

double r(size_t dimension_, const Int4 *score_, const double *prob_, double theta_)

static const size_t kFadeCount

bool operator<(const CSeqGlyph &o1, const CSeqGlyph &o2)

static const sljit_gpr r1

static const sljit_gpr r0

static SLJIT_INLINE sljit_ins l(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

basic sort by geometry position function.

bool operator()(const CRef< CSeqGlyph > &ref_obj1, const CRef< CSeqGlyph > &ref_obj2) const

basic sort by sequence position function.

bool operator()(const CRef< CSeqGlyph > &ref_obj1, const CRef< CSeqGlyph > &ref_obj2) const

static bool s_CompareCRefs(const CRef< CSeqGlyph > &ref_obj1, const CRef< CSeqGlyph > &ref_obj2)

basic sort by sequence size function Larger size objects will be put in front.

static bool s_CompareCRefs(const CRef< CSeqGlyph > &ref_obj1, const CRef< CSeqGlyph > &ref_obj2)

bool operator()(const CRef< CSeqGlyph > &ref_obj1, const CRef< CSeqGlyph > &ref_obj2) const

basic sort by geometry size function

bool operator()(const CRef< CSeqGlyph > &ref_obj1, const CRef< CSeqGlyph > &ref_obj2) const

static CS_CONTEXT * context

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