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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/seq__entry__handle_8hpp_source.html below:

NCBI C++ ToolKit: include/objmgr/seq_entry_handle.hpp Source File

1 #ifndef SEQ_ENTRY_HANDLE__HPP 2 #define SEQ_ENTRY_HANDLE__HPP 121  bool

HasParentEntry(

void

)

const

;

135  bool

IsTopLevelEntry(

void

)

const

;

141  bool

IsTopLevelSeq_submit(

void

)

const

;

142  const CSeq_submit

& GetTopLevelSeq_submit(

void

)

const

;

143  const CSubmit_block

& GetTopLevelSubmit_block(

void

)

const

;

168  bool

IsSeq(

void

)

const

;

170  TSeq

GetSeq(

void

)

const

;

173  bool

IsSet(

void

)

const

;

175  TSet

GetSet(

void

)

const

;

178  bool

IsSetDescr(

void

)

const

;

180  const TDescr

& GetDescr(

void

)

const

;

186  TBlobId

GetBlobId(

void

)

const

;

193  bool

IsRemoved(

void

)

const

;

241  const TScopeInfo

& x_GetScopeInfo(

void

)

const

;

280  void

SetDescr(

TDescr

& v)

const

;

281  TDescr

& SetDescr(

void

)

const

;

282  void

ResetDescr(

void

)

const

;

283  bool

AddSeqdesc(

CSeqdesc

& v)

const

;

287  void

AddDescr(

TDescr

& v)

const

;

292  TSet

SetSet(

void

)

const

;

293  TSeq

SetSeq(

void

)

const

;

297  void

SelectNone(

void

)

const

;

316  TSet

TakeSet(

const TSet

& seqset)

const

;

338  TSeq

TakeSeq(

const TSeq

& seq)

const

;

361  void

CollapseSet(

void

)

const

;

366  TSeq

ConvertSetToSeq(

void

)

const

;

459  int

index = -1)

const

;

475  int

index = -1)

const

;

491  int

index = -1)

const

;

508  int

index = -1)

const

;

525  int

index = -1)

const

;

542  int

index = -1)

const

;

559  int

index = -1)

const

;

563  void

Remove(

void

)

const

;

566  void

UpdateAnnotations(

void

)

const

;

582  void

x_RealSetDescr(

TDescr

& v)

const

;

583  void

x_RealResetDescr(

void

)

const

;

584  bool

x_RealAddSeqdesc(

CSeqdesc

& v)

const

;

587  void

x_RealAddSeq_descr(

TDescr

& v)

const

;

CBioseq_set_EditHandle –.

const CTSE_Handle & GetTSE_Handle(void) const

const CTSE_Info_Object & GetObjectInfo_Base(void) const

bool IsRemoved(void) const

TScopeInfo & GetNCObject(void) const

@Seq_descr.hpp User-defined methods of the data storage class.

CScope_Impl & x_GetScopeImpl(void) const

CScope & GetScope(void) const

Returns scope.

bool operator<(const CEquivRange &A, const CEquivRange &B)

bool operator==(const CEquivRange &A, const CEquivRange &B)

bool operator<(const CSeq_entry_Handle &handle) const

For usage in containers.

TObjectInfo & GetNCObjectInfo(void)

CSeq_entry_Info TObjectInfo

TScopeInfo & x_GetScopeInfo(void) const

const TObjectInfo & GetObjectInfo(void) const

CSeq_entry TObject

Unified interface for templates.

CSeq_entry_ScopeInfo TScopeInfo

CBioseq_set::TClass TClass

E_Choice Which(void) const

bool operator==(const CSeq_entry_Handle &handle) const

Check if handles point to the same seq-entry.

bool IsRemoved(void) const

const CTSE_Handle & GetTSE_Handle(void) const

DECLARE_OPERATOR_BOOL(m_Info.IsValid())

CScopeInfo_Ref< TScopeInfo > TLock

bool operator!=(const CSeq_entry_Handle &handle) const

CBioseq_set_EditHandle TSet

CSeq_entry_ScopeInfo(const CTSE_Handle &tse, const TObjectInfo &info)

CConstRef< CSeq_entry > GetCompleteSeq_entry(void) const

Complete and get const reference to the seq-entry.

CScope & GetScope(void) const

Get scope this handle belongs to.

const TScopeInfo & x_GetScopeInfo(void) const

CSeq_entry::E_Choice E_Choice

CConstRef< TObject > GetObjectCore(void) const

CConstRef< TObject > GetCompleteObject(void) const

TSet SelectSet(const TSet &seqset) const

Make the empty Seq-entry be in set state with Bioseq-set object from the argument seqset.

CSeq_entry_EditHandle(void)

CScope_Impl & x_GetScopeImpl(void) const

TSeq SelectSeq(const TSeq &seq) const

Make the empty Seq-entry be in seq state with Bioseq object from the argument seqset.

CConstRef< CSeq_entry > GetSeq_entryCore(void) const

Get const reference to the seq-entry.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

bool operator!=(const CNCBI_IPAddr &lhs, unsigned int rhs)

#define NCBI_XOBJMGR_EXPORT

E_Choice

Choice variants.

void Swap(T &a, T &b) RAPIDJSON_NOEXCEPT

Custom swap() to avoid dependency on C++ <algorithm> header.

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.

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