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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/seq__edit_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/edit/seq_edit.cpp Source File

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& seq_inst = bioseq.SetInst();

(seq_inst.IsSetLength());

seq_vec.

(0, seq_inst.GetLength(), seqdata);

seq_inst.SetSeq_data(*pSeqData);

static TSeqPos Pack(CSeq_data *in_seq, TSeqPos uLength=ncbi::numeric_limits< TSeqPos >::max())

Include a standard set of the NCBI C++ Toolkit most basic headers.

@ eCoding_Iupac

Set coding to printable coding (Iupacna or Iupacaa)

TCoding GetCoding(void) const

Target sequence coding.

void GetSeqData(TSeqPos start, TSeqPos stop, string &buffer) const

Fill the buffer string with the sequence data for the interval [start, stop).

CRef< C > Ref(C *object)

Helper functions to get CRef<> and CConstRef<> objects.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

@ eRepr_delta

sequence made by changes (delta) to others

@ eRepr_raw

continuous sequence

void g_ConvertDeltaToRawSeq(CBioseq &bioseq, CScope *pScope)

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