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NCBI C++ ToolKit: src/objmgr/seq_descr_ci.cpp Source File

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54

: m_CurrentBase(&handle.x_GetInfo()),

56

m_ParentLimit(search_depth-1)

64

: m_CurrentBase(&handle.x_GetInfo()),

66

m_ParentLimit(search_depth-1)

74

: m_ParentLimit(search_depth-1)

76  if

( entry.

IsSeq

() ) {

90

: m_CurrentBase(iter.m_CurrentBase),

91

m_CurrentSeq(iter.m_CurrentSeq),

92

m_CurrentSet(iter.m_CurrentSet),

93

m_ParentLimit(iter.m_ParentLimit)

106  if

(

this

!= &iter) {

bool IsSetDescr(void) const

CBioseq_set_Handle GetParentBioseq_set(void) const

Return a handle for the parent Bioseq-set, or null handle.

CSeq_entry_Handle GetParentEntry(void) const

Get parent Seq-entry handle.

CBioseq_set_Handle GetParentBioseq_set(void) const

Return a handle for the parent Bioseq-set, or null handle.

CSeq_entry_Handle GetParentEntry(void) const

Return a handle for the parent seq-entry of the bioseq.

void Reset(void)

Reset handle and make it not to point to any bioseq.

const CBioseq_set_Info & x_GetInfo(void) const

const CBioseq_Info & x_GetInfo(void) const

CConstRef< CBioseq_Base_Info > m_CurrentBase

CBioseq_set_Handle m_CurrentSet

CSeq_descr_CI(void)

Create an empty iterator.

CBioseq_Handle m_CurrentSeq

CSeq_descr_CI & operator=(const CSeq_descr_CI &iter)

CSeq_entry_Handle GetSeq_entry_Handle(void) const

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.


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