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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/seq__annot__handle_8hpp_source.html below:

NCBI C++ ToolKit: include/objmgr/seq_annot_handle.hpp Source File

1 #ifndef SEQ_ANNOT_HANDLE__HPP 2 #define SEQ_ANNOT_HANDLE__HPP 66 class

CSeq_align_EditHandle;

67 class

CSeq_graph_EditHandle;

108  bool

IsRemoved(

void

)

const

;

160  bool

IsNamed(

void

)

const

;

161  const string

& GetName(

void

)

const

;

165  bool

IsFtable(

void

)

const

;

166  bool

IsAlign(

void

)

const

;

167  bool

IsGraph(

void

)

const

;

168  bool

IsIds(

void

)

const

;

169  bool

IsLocs(

void

)

const

;

170  bool

IsSeq_table(

void

)

const

;

172  size_t

GetSeq_tableNumRows(

void

)

const

;

174  bool

Seq_annot_IsSetId(

void

)

const

;

175  bool

Seq_annot_CanGetId(

void

)

const

;

178  bool

Seq_annot_IsSetDb(

void

)

const

;

179  bool

Seq_annot_CanGetDb(

void

)

const

;

182  bool

Seq_annot_IsSetName(

void

)

const

;

183  bool

Seq_annot_CanGetName(

void

)

const

;

186  bool

Seq_annot_IsSetDesc(

void

)

const

;

187  bool

Seq_annot_CanGetDesc(

void

)

const

;

206  const TScopeInfo

& x_GetScopeInfo(

void

)

const

;

208  const CSeq_annot

& x_GetSeq_annotCore(

void

)

const

;

221 template

<

typename

Handle>

236  void

Remove(

void

)

const

;

255  void

ReorderFtable(

CFeat_CI

& feat_ci)

const

;

256  void

ReorderFtable(

const

vector<CSeq_feat_Handle>& feats)

const

;

259  void

Update(

void

)

const

;

CBioseq_set_EditHandle –.

const CTSE_Handle & GetTSE_Handle(void) const

const CTSE_Info_Object & GetObjectInfo_Base(void) const

bool IsRemoved(void) const

TScopeInfo & GetNCObject(void) const

CSeq_feat_EditHandle –.

namespace ncbi::objects::

CScope_Impl & x_GetScopeImpl(void) const

CScope & GetScope(void) const

Returns scope.

bool operator<(const CEquivRange &A, const CEquivRange &B)

bool operator==(const CEquivRange &A, const CEquivRange &B)

bool operator<(const CSeq_annot_Handle &annot) const

For usage in containers.

CSeq_annot TObject

Unified interface for templates.

const TScopeInfo & x_GetScopeInfo(void) const

TScopeInfo & x_GetScopeInfo(void) const

DECLARE_OPERATOR_BOOL(m_Info.IsValid())

CSeq_annot_Info TObjectInfo

CSeq_annot_EditHandle(void)

friend class CSeq_annot_EditHandle

TScopeInfo & x_GetScopeInfo(void) const

void Swap(CSeq_annot_Handle &annot)

CSeq_annot_ScopeInfo TScopeInfo

CScopeInfo_Ref< TScopeInfo > m_Info

CScope_Impl & x_GetScopeImpl(void) const

const CTSE_Handle & GetTSE_Handle(void) const

CSeq_annot_ScopeInfo(const CTSE_Handle &tse, const TObjectInfo &info)

CConstRef< CSeq_annot > GetCompleteSeq_annot(void) const

Complete and return const reference to the current seq-annot.

bool IsRemoved(void) const

CConstRef< TObject > GetObjectCore(void) const

CConstRef< TObject > GetCompleteObject(void) const

bool operator==(const CSeq_annot_Handle &annot) const

Check if handles point to the same seq-annot.

CScope & GetScope(void) const

Get scope this handle belongs to.

bool operator!=(const CSeq_annot_Handle &annot) const

CSeq_entry_Info & x_GetInfo(void) const

CConstRef< CSeq_annot > GetSeq_annotCore(void) const

TObjectInfo & GetNCObjectInfo(void)

const TObjectInfo & GetObjectInfo(void) const

void Swap(TThisType &ref)

Swaps the pointer with another reference.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

bool operator!=(const CNCBI_IPAddr &lhs, unsigned int rhs)

#define NCBI_XOBJMGR_EXPORT

list< CRef< CAnnot_id > > TId

E_Choice

Choice variants.

void Swap(T &a, T &b) RAPIDJSON_NOEXCEPT

Custom swap() to avoid dependency on C++ <algorithm> header.

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.

CRef< objects::CSeq_annot > AddFeat(CRef< objects::CSeq_feat > feat, CRef< objects::CSeq_entry > entry)

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