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NCBI C++ ToolKit: include/objmgr/seq_align_handle.hpp Source File

<

Handle>

<

Handle>

<

Handle>

IsSetDim(

)

;

IsSetScore(

)

;

IsSetBounds(

)

;

IsRemoved(

)

;

Remove(

)

;

Replace(

& new_obj)

;

Update(

)

;

& x_GetSeq_align(

)

;

x_RealRemove(

)

;

x_RealReplace(

& new_obj)

;

: m_AnnotIndex(eNull)

CSeq_annot_Handle m_Annot

CScope & GetScope(void) const

Get scope this handle belongs to.

bool IsSetBounds(void) const

DECLARE_OPERATOR_BOOL(m_Annot &&m_AnnotIndex !=eNull &&!IsRemoved())

const CSeq_align::TSegs & GetSegs(void) const

CSeq_align::TDim GetDim(void) const

bool IsSetScore(void) const

const CSeq_align & x_GetSeq_align(void) const

const CSeq_align::TBounds & GetBounds(void) const

CSeq_align::EType GetType(void) const

bool IsSetDim(void) const

CScope & GetScope(void) const

Get scope this handle belongs to.

const CSeq_annot_Handle & GetAnnot(void) const

Get handle to the seq-annot.

const CSeq_align::TScore & GetScore(void) const

int32_t Int4

4-byte (32-bit) signed integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

#define NCBI_XOBJMGR_EXPORT

bool IsSetBounds(void) const

regions of sequence over which align was computed Check if a value has been assigned to Bounds data m...

vector< CRef< CScore > > TScore

TDim GetDim(void) const

Get the Dim member data.

list< CRef< CSeq_loc > > TBounds

TType GetType(void) const

Get the Type member data.

bool IsSetDim(void) const

dimensionality Check if a value has been assigned to Dim data member.

bool IsSetScore(void) const

for whole alignment Check if a value has been assigned to Score data member.

const TScore & GetScore(void) const

Get the Score member data.

const TSegs & GetSegs(void) const

Get the Segs member data.

const TBounds & GetBounds(void) const

Get the Bounds member data.

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.

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