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NCBI C++ ToolKit: src/objmgr/seq_align_handle.cpp Source File

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(annot.x_GetInfo().GetInfo(index).IsAlign());

(

.IsRemoved() ) {

);

.GetAlign();

processor.

(

TCommand(*

));

processor.

(

TCommand(*

, new_obj));

bool IsRemoved(void) const

CMDReturn< CMD >::TReturn run(CMD *cmd)

Base class for all object manager exceptions.

void x_ClearAnnotCache(void)

void Remove(TAnnotIndex index)

const CAnnotObject_Info & GetInfo(TAnnotIndex index) const

void Update(TAnnotIndex index)

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

CSeq_annot_Info & x_GetInfo(void) const

void Update(void) const

Update index after manual modification of the object.

void Remove(void) const

Remove the Seq-align from Seq-annot.

CScope_Impl & x_GetScopeImpl(void) const

CSeq_annot_Handle m_Annot

void Replace(const CSeq_align &new_obj) const

Replace the Seq-align with new Seq-align object.

void x_RealRemove(void) const

Remove the Seq-align from Seq-annot.

CConstRef< CSeq_align > GetSeq_align(void) const

Get const reference to current seq-align.

const CSeq_align & x_GetSeq_align(void) const

CSeq_annot_EditHandle GetEditHandle(void) const

Get 'edit' version of handle.

const CSeq_annot_Info & x_GetInfo(void) const

bool IsRemoved(void) const

Return true if this Seq-align was removed already.

void x_RealReplace(const CSeq_align &new_obj) const

Replace the Seq-align with new Seq-align object.

const CSeq_annot_Handle & GetAnnot(void) const

Get handle to the seq-annot.

CConstRef< C > ConstRef(const C *object)

Template function for conversion of const object pointer to CConstRef.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

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