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NCBI C++ ToolKit: src/gui/packages/pkg_sequence_edit/segregate_sets.cpp Source File

wxWindowID

,

wxString& caption,

wxPoint& pos,

wxSize&

,

style )

(parent,

, caption, pos,

, style);

( wxWindow* parent, wxWindowID

,

wxString& caption,

wxPoint& pos,

wxSize&

,

style )

SetExtraStyle(wxWS_EX_BLOCK_EVENTS);

wxFrame::Create( parent,

, caption, pos,

, style );

GetSizer()->SetSizeHints(

);

wxBoxSizer* itemBoxSizer1 =

wxBoxSizer(wxHORIZONTAL);

frame->SetSizer(itemBoxSizer1);

wxPanel* itemDialog1 =

wxPanel(

);

itemBoxSizer1->Add(itemDialog1, 1, wxGROW|wxALL, 0);

wxBoxSizer* itemBoxSizer2 =

wxBoxSizer(wxVERTICAL);

itemDialog1->SetSizer(itemBoxSizer2);

itemBoxSizer2->Add(

, 1, wxGROW|wxALL, 5);

->AddPage(panel3,

(

));

->AddPage(panel7,

(

));

->AddPage(panel10,

(

));

itemBoxSizer2->Add(

, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

wxBoxSizer* itemBoxSizer12 =

wxBoxSizer(wxHORIZONTAL);

itemBoxSizer2->Add(itemBoxSizer12, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

wxButton* itemButton13 =

wxButton( itemDialog1, wxID_OK,

(

), wxDefaultPosition, wxDefaultSize, 0 );

itemBoxSizer12->Add(itemButton13, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

wxButton* itemButton14 =

wxButton( itemDialog1, wxID_CANCEL,

(

), wxDefaultPosition, wxDefaultSize, 0 );

itemBoxSizer12->Add(itemButton14, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

=

wxCheckBox( itemDialog1,

,

(

), wxDefaultPosition, wxDefaultSize, 0 );

itemBoxSizer12->Add(

, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

vector< vector<int> > &subsets =

();

(

&& !subsets.empty() && !subsets.front().empty())

= subsets.front().front();

(grandparent != parent)

changed_set->SetSeq_set().push_back(new_se);

changed_set->SetClass(parent.

());

(

s = 0; s < subsets.size(); s++)

->AddCommand(*set_cmd);

user.

().SetStr(

);

method->

(

);

se.

().Set().push_back( user_object );

user_object_present =

;

title_present =

;

((*it)->IsSetDescr())

(CSeq_descr::Tdata::const_iterator desc = (*it)->GetDescr().Get().begin(); desc != (*it)->GetDescr().Get().end(); ++desc)

((*desc)->IsTitle() && !(*desc)->GetTitle().empty())

title_present =

;

(CSeq_descr::Tdata::const_iterator desc = se.

().

().begin(); desc != se.

().

().end(); ++desc)

(title_present && (*desc)->IsTitle())

((*desc)->IsUser() && (*desc)->GetUser().IsSetType() && (*desc)->GetUser().GetType().IsStr() && (*desc)->GetUser().GetType().GetStr() ==

)

user_object_present =

;

(*it)->SetDescr().Set().push_back(*desc);

(user_object_present)

new_set->SetClass(top_class);

(

j = 0; j < subset.size(); j++)

new_set->SetSeq_set().push_back(se);

new_se->

(*new_set);

CBioseq_set::TSeq_set::iterator it = changed_set.

().begin();

(it != changed_set.

().end())

(*it)->GetSet().CanGetClass() && (*it)->GetSet().GetClass() ==

&& (*it)->GetSet().GetNucFromNucProtSet().CanGetId() &&

( (*it)->GetSet().GetSeq_set().empty() )

wxBoxSizer* itemBoxSizer2 =

wxBoxSizer(wxVERTICAL);

itemPanel1->SetSizer(itemBoxSizer2);

wxBoxSizer* itemBoxSizer3 =

wxBoxSizer(wxHORIZONTAL);

itemBoxSizer2->Add(itemBoxSizer3, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

m_TreeCtrl =

wxTreeCtrl(itemPanel1,

, wxDefaultPosition, wxSize(400,320),wxTR_DEFAULT_STYLE|wxTR_HIDE_ROOT|wxTR_MULTIPLE );

itemBoxSizer3->Add(m_TreeCtrl, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

m_ListCtrl2 =

wxListCtrl( itemPanel1,

, wxDefaultPosition, wxSize(400, 320), wxLC_REPORT|wxLC_NO_HEADER );

itemBoxSizer3->Add(m_ListCtrl2, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

m_ListCtrl2->InsertColumn(0,wxEmptyString,wxLIST_FORMAT_LEFT,380);

wxBoxSizer* itemBoxSizer4 =

wxBoxSizer(wxHORIZONTAL);

itemBoxSizer2->Add(itemBoxSizer4, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

wxButton* itemButton1 =

wxButton(itemPanel1, ID_RBSUB_TOLEFT,

(

), wxDefaultPosition, wxDefaultSize, 0);

itemBoxSizer4->Add(itemButton1, 0, wxALIGN_CENTER_VERTICAL|wxALL, 15);

wxButton* itemButton2 =

wxButton( itemPanel1, ID_RBSUB_TORIGHT,

(

), wxDefaultPosition, wxDefaultSize, 0 );

itemBoxSizer4->Add(itemButton2, 0, wxALIGN_CENTER_VERTICAL|wxALL, 15);

wxSizer* itemBoxSizer2 = GetSizer();

wxBoxSizer* itemBoxSizer12 =

wxBoxSizer(wxHORIZONTAL);

itemBoxSizer2->Add(itemBoxSizer12, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

wxButton* itemButton13 =

wxButton( itemPanel1,

,

(

), wxDefaultPosition, wxDefaultSize, 0 );

itemBoxSizer12->Add(itemButton13, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

wxButton* itemButton14 =

wxButton( itemPanel1,

,

(

), wxDefaultPosition, wxDefaultSize, 0 );

itemBoxSizer12->Add(itemButton14, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

wxButton* itemButton15 =

wxButton( itemPanel1,

,

(

), wxDefaultPosition, wxDefaultSize, 0 );

itemBoxSizer12->Add(itemButton15, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

wxWindow *win = GetParent();

win = win->GetParent();

(

.IsGenbank() &&

.GetGenbank().IsSetAccession())

labels[0] =

.GetGenbank().GetAccession();

(

.IsGeneral() &&

.GetGeneral().IsSetDb() &&

.GetGeneral().GetDb() ==

&&

.GetGeneral().IsSetTag() &&

.GetGeneral().GetTag().IsStr())

labels[1] =

.GetGeneral().GetTag().GetStr();

(

.IsGeneral() &&

.GetGeneral().IsSetDb() &&

.GetGeneral().GetDb() ==

&&

.GetGeneral().IsSetTag() &&

.GetGeneral().GetTag().IsStr())

labels[2] =

.GetGeneral().GetTag().GetStr();

(

.IsLocal() &&

.GetLocal().IsStr())

labels[3] =

.GetLocal().GetStr();

vector<string> labels(4);

(CBioseq_Handle::TId::const_iterator it = seh.

().

().begin(); it != seh.

().

().end(); ++it)

(

=0;

<labels.size();

++)

(!labels[

].

())

strs.push_back(labels[

]);

(

.IsGenbank() &&

.GetGenbank().IsSetAccession())

(

.IsGeneral() &&

.GetGeneral().IsSetDb() &&

.GetGeneral().GetDb() ==

&&

.GetGeneral().IsSetTag() &&

.GetGeneral().GetTag().IsStr())

labels.

(

.GetGeneral().GetTag().GetStr());

labels.

(

+

.GetGeneral().GetTag().GetStr());

, second;

(

.IsGeneral() &&

.GetGeneral().IsSetDb() &&

.GetGeneral().GetDb() ==

&&

.GetGeneral().IsSetTag() &&

.GetGeneral().GetTag().IsStr())

labels.

(

.GetGeneral().GetTag().GetStr());

labels.

(

+

.GetGeneral().GetTag().GetStr());

(

.IsLocal() &&

.GetLocal().IsStr())

labels.

(

.GetLocal().GetStr());

(CBioseq_Handle::TId::const_iterator it = seh.

().

().begin(); it != seh.

().

().end(); ++it)

vector<string> vec(strs.

(), strs.

());

constraint->DoesListMatch(vec);

(

k=0; k<

.size(); k++)

(

j=0; j<

[k].size(); j++)

->SetItemBackgroundColour(item,*wxLIGHT_GREY);

(

=0;

<set_size; ++

)

(removed.

(

) == removed.

())

(vector<pair<int,string> >::iterator s = it->second.begin(); s != it->second.end(); ++s)

avail_to_cluster_label[s->first] = pair<string,string>(it->first,s->second);

wxTreeItemId root =

->AddRoot(wxEmptyString);

(

== avail_to_cluster_label.

())

(cluster_to_id.

(wxString(it->first)) == cluster_to_id.

())

parent =

->AppendItem(root,wxString(it->first));

cluster_to_id[wxString(it->first)] = parent;

parent = cluster_to_id[wxString(it->first)];

vector<wxTreeItemId> to_delete;

wxTreeItemIdValue cookie;

wxTreeItemId

=

->GetFirstChild( root, cookie );

wxTreeItemIdValue cookie2;

wxTreeItemId item =

->GetFirstChild(

, cookie2 );

to_delete.push_back(

);

=

->GetNextChild( root, cookie);

(

=0;

<to_delete.size();

++)

wxWindow *btn =

wxWindow*

(

.GetEventObject());

=

*

(btn->GetParent());

wxArrayTreeItemIds selection;

size_sel =

->GetSelections(selection);

(

=0;

<size_sel;

++)

wxTreeItemId

= selection[

];

vector<int> cluster_subset;

wxTreeItemIdValue cookie;

wxTreeItemId item =

->GetFirstChild(

, cookie );

( item.IsOk() )

cluster_subset.push_back(

);

item =

->GetNextChild(

, cookie);

subset.push_back(

);

(

.empty() && !subset.empty())

item =

->GetNextItem(item, wxLIST_NEXT_ALL, wxLIST_STATE_SELECTED);

( item == -1 )

;

=

(

->GetItemData(item));

(

k=0; k<

.size(); k++)

wxTreeItemId root =

->GetRootItem();

wxTreeItemIdValue cookie;

wxTreeItemId

=

->GetFirstChild( root, cookie );

vector<int> cluster_subset;

wxTreeItemIdValue cookie2;

wxTreeItemId item =

->GetFirstChild(

, cookie2 );

( item.IsOk() )

cluster_subset.push_back(

);

item =

->GetNextChild(

, cookie2);

subset.push_back(

);

=

->GetNextChild( root, cookie);

(

.empty() && !subset.empty())

wxPanel::Create( parent,

, pos,

, style );

GetSizer()->SetSizeHints(

);

(selected.

(bsh) != selected.

())

subset.push_back(

);

wxSizer* itemBoxSizer2 = GetSizer();

wxBoxSizer* itemBoxSizer3 =

wxBoxSizer(wxHORIZONTAL);

itemBoxSizer2->Add(itemBoxSizer3, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

wxBoxSizer* itemBoxSizer4 =

wxBoxSizer(wxVERTICAL);

itemBoxSizer3->Add(itemBoxSizer4, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

wxStaticText* itemStaticText5 =

wxStaticText( itemPanel1, wxID_STATIC,

(

), wxDefaultPosition, wxDefaultSize, 0 );

itemBoxSizer4->Add(itemStaticText5, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

wxStaticText* itemStaticText6 =

wxStaticText( itemPanel1, wxID_STATIC,

(

), wxDefaultPosition, wxDefaultSize, 0 );

itemBoxSizer4->Add(itemStaticText6, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

wxBoxSizer* itemBoxSizer7 =

wxBoxSizer(wxVERTICAL);

itemBoxSizer3->Add(itemBoxSizer7, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

m_Min =

wxTextCtrl(itemPanel1, ID_LENGTH_MINTEXT, wxEmptyString, wxDefaultPosition, wxSize(250, -1), 0);

itemBoxSizer7->Add(m_Min, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

m_Max =

wxTextCtrl(itemPanel1, ID_LENGTH_MAXTEXT, wxEmptyString, wxDefaultPosition, wxSize(250, -1), 0);

itemBoxSizer7->Add(m_Max, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

min_length = 0;

max_length = INT_MAX;

min_num =

->GetValue().ToULong(&min_length);

max_num =

->GetValue().ToULong(&max_length);

( !min_num && !max_num )

(length >= min_length && length <= max_length)

subset.push_back(

);

(!subset.empty())

(

= 0;

< set_size;

++)

(!

.empty())

wxSizer* itemBoxSizer2 = GetSizer();

itemBoxSizer2->Add(m_StringConstraintPanel, 0, wxALIGN_CENTER_HORIZONTAL|wxALL|

, 0);

m_StringConstraintPanel->SetStringSelection(

(

));

(!constraint)

;

subset.push_back(

);

(!subset.empty())

(

= 0;

< set_size;

++)

(!

.empty())

wxSizer* itemBoxSizer2 = GetSizer();

itemBoxSizer2->Add(m_Constraint, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

constraint_field;

(constraint_field_panel)

constraint_field = constraint_field_panel->

();

constraint_field = constraint_field_type;

constraint_field =

+ constraint_field;

(!constraint || constraint_field.empty())

;

vector<CRef<edit::CApplyObject> > src_objects = src_col->

(seh, constraint_field, constraint);

(!src_objects.empty())

subset.push_back(

);

(!subset.empty())

constraint_field;

(constraint_field_panel)

constraint_field = constraint_field_panel->

();

constraint_field = constraint_field_type;

constraint_field =

+ constraint_field;

(constraint_field.empty())

;

(

= 0;

< set_size;

++)

wxSizer* itemBoxSizer2 = GetSizer();

wxBoxSizer* itemBoxSizer3 =

wxBoxSizer(wxHORIZONTAL);

itemBoxSizer2->Add(itemBoxSizer3, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

wxBoxSizer* itemBoxSizer4 =

wxBoxSizer(wxVERTICAL);

itemBoxSizer3->Add(itemBoxSizer4, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

wxStaticText* itemStaticText5 =

wxStaticText( itemPanel1, wxID_STATIC,

(

), wxDefaultPosition, wxDefaultSize, 0 );

itemBoxSizer4->Add(itemStaticText5, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

wxBoxSizer* itemBoxSizer7 =

wxBoxSizer(wxVERTICAL);

itemBoxSizer3->Add(itemBoxSizer7, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

m_Num =

wxTextCtrl(itemPanel1, ID_NUM_TEXTCTRL, wxEmptyString, wxDefaultPosition, wxSize(250, -1), 0);

itemBoxSizer7->Add(m_Num, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

num = 0;

num_exists =

->GetValue().ToULong(&num);

remainder = total_items % num;

items_per_subset = total_items / num;

subset.push_back(

);

(subset.size() >= items_per_subset+1)

(subset.size() >= items_per_subset && !subset.empty())

(

.IsStr())

name =

.GetStr();

name = name.substr(0,pos);

(vector<CSeq_id_Handle>::const_iterator idh = seh.

().

().begin(); idh != seh.

().

().end(); ++idh)

(idh->GetSeqId()->IsGeneral() && idh->GetSeqId()->GetGeneral().IsSetDb() && idh->GetSeqId()->GetGeneral().GetDb() ==

&& idh->GetSeqId()->GetGeneral().IsSetTag() )

filename =

(idh->GetSeqId()->GetGeneral().GetTag());

(!filename.empty())

tag_to_subset[filename].push_back(

);

((*idh)->IsGeneral() && (*idh)->GetGeneral().IsSetDb() && (*idh)->GetGeneral().GetDb() ==

&& (*idh)->GetGeneral().IsSetTag())

filename =

((*idh)->GetGeneral().GetTag());

(!filename.empty())

tag_to_subset[filename].push_back(

);

(

<

,vector<int> >::iterator it = tag_to_subset.

(); it != tag_to_subset.

(); ++it)

(!it->second.empty())

(

= 0;

< set_size;

++)

(vector<CSeq_id_Handle>::const_iterator idh = seh.

().

().begin(); idh != seh.

().

().end(); ++idh)

(idh->GetSeqId()->IsGeneral() && idh->GetSeqId()->GetGeneral().IsSetDb() && idh->GetSeqId()->GetGeneral().GetDb() ==

&& idh->GetSeqId()->GetGeneral().IsSetTag())

filename =

(idh->GetSeqId()->GetGeneral().GetTag());

((*idh)->IsGeneral() && (*idh)->GetGeneral().IsSetDb() && (*idh)->GetGeneral().GetDb() ==

&& (*idh)->GetGeneral().IsSetTag())

filename =

((*idh)->GetGeneral().GetTag());

(!

.empty() && !filename.empty())

wxSizer* itemBoxSizer2 = GetSizer();

wxPanel *container1 =

wxPanel( itemPanel1,

, wxDefaultPosition, wxSize(800,260), 0 );

itemBoxSizer2->Add(container1, 0, wxALIGN_LEFT|wxALL|

, 0);

wxBoxSizer* itemBoxSizer3 =

wxBoxSizer(wxHORIZONTAL);

container1->SetSizer(itemBoxSizer3);

vector<CFieldNamePanel::EFieldType> field_types;

m_FieldType =

( container1, field_types,

,

,

, wxDefaultPosition, wxDefaultSize, 0 );

itemBoxSizer3->Add(m_FieldType, 0, wxALIGN_LEFT|wxALL|

, 0);

(constraint_field.empty())

;

(!values.

() && !values.

()->empty())

value_to_subset[*values.

()].push_back(

);

(

<

,vector<int> >::iterator it = value_to_subset.

(); it != value_to_subset.

(); ++it)

(!it->second.empty())

(constraint_field.empty())

;

(

= 0;

< set_size;

++)

wxSizerItemList& slist = sizer->GetChildren();

(wxSizerItemList::iterator iter = slist.begin(); iter != slist.end(); ++iter, ++

) {

((*iter)->IsSizer()) {

}

((*iter)->IsWindow()) {

wxWindow* child = (*iter)->GetWindow();

wxSizer* subsizer = child->GetSizer();

wxSizer* itemBoxSizer2 = GetSizer();

itemBoxSizer2->Add(m_FeatureType, 0, wxALIGN_CENTER_HORIZONTAL|wxALL|

, 0);

m_FeatureType->ListPresentFeaturesFirst(owner->

());

(constraint_field.empty())

;

itype, isubtype;

subset.push_back(

);

(!subset.empty())

(constraint_field.empty())

;

itype, isubtype;

(

= 0;

< set_size;

++)

(!

.empty() && feat_iter)

wxSizer* itemBoxSizer2 = GetSizer();

wxArrayString choices;

m_DescType =

wxChoice(itemPanel1, ID_DESC_CHOICE, wxDefaultPosition, wxDefaultSize, choices, 0);

itemBoxSizer2->Add(m_DescType, 0, wxALIGN_CENTER_HORIZONTAL|wxALL|

, 0);

m_DescType->SetSelection(0);

(ichoice == wxNOT_FOUND)

;

subset.push_back(

);

(!subset.empty())

(ichoice == wxNOT_FOUND)

(

= 0;

< set_size;

++)

(!

.empty() && !desc_label.empty())

wxSizer* itemBoxSizer2 = GetSizer();

wxBoxSizer* itemBoxSizer3 =

wxBoxSizer(wxHORIZONTAL);

itemBoxSizer2->Add(itemBoxSizer3, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

wxBoxSizer* itemBoxSizer4 =

wxBoxSizer(wxVERTICAL);

itemBoxSizer3->Add(itemBoxSizer4, 0, wxALIGN_TOP|wxALL, 5);

m_Class =

wxCheckBox(itemPanel1, ID_MOLINFO_CHKBX1,

(

));

itemBoxSizer4->Add(m_Class, 0, wxALIGN_LEFT|wxALL, 5);

m_Type =

wxCheckBox(itemPanel1, ID_MOLINFO_CHKBX2,

(

));

itemBoxSizer4->Add(m_Type, 0, wxALIGN_LEFT|wxALL, 5);

m_Topology =

wxCheckBox(itemPanel1, ID_MOLINFO_CHKBX3,

(

));

itemBoxSizer4->Add(m_Topology, 0, wxALIGN_LEFT|wxALL, 5);

(

->IsChecked() )

class_type_topology_to_subset[pair<int, pair<int,int> >(iclass,pair<int,int>(itype,itopology))].push_back(

);

(

< pair<

, pair<int,int> >,vector<int> >::iterator it = class_type_topology_to_subset.

(); it != class_type_topology_to_subset.

(); ++it)

(!it->second.empty())

(

= 0;

< set_size;

++)

(

->IsChecked() )

(!

.str().empty())

(!

.str().empty())

(!

.empty() && !

.str().empty())

wxSizer* itemBoxSizer2 = GetSizer();

wxArrayString choices;

GetAllLabels(choices);

m_Label =

wxChoice(itemPanel1, ID_STRCOMMENT_CHOICE, wxDefaultPosition, wxDefaultSize, choices, 0);

itemBoxSizer2->Add(m_Label, 0, wxALIGN_CENTER_HORIZONTAL|wxALL|

, 0);

(

= 0;

< set_size;

++)

choices.Add(wxString(*

));

CUser_object::TData::const_iterator

= user.

().begin();

(

!= user.

().end())

(!

.empty() &&

!=

&&

!=

)

ichoice =

->GetSelection();

(ichoice == wxNOT_FOUND)

;

=

->GetString(ichoice).ToStdString();

subset.push_back(

);

(!subset.empty())

(

= 0;

< set_size;

++)

EVT_CHECKBOX(ID_CADJUSTFEATURES_CHECKBOX, CAdjustFeaturesForGaps::OnKnownUnknownSelected) EVT_CHECKBOX(ID_CADJUSTFEATURES_CHECKBOX1

const CBioseq & GetNucFromNucProtSet(void) const

const CSeq_id * GetFirstId() const

TSeqPos GetLength(void) const

bool IsSetLength(void) const

string GetFieldType(void) const

CFieldNamePanel * GetFieldNamePanel(void)

void ListPresentFeaturesFirst(objects::CSeq_entry_Handle seh)

CRef< edit::CStringConstraint > GetStringConstraint(void)

virtual void SetClusters()

virtual void OnSelectButton(CSegregateSetsBase *win)

void OnChoiceChanged(wxCommandEvent &event)

virtual string GetFieldName(const bool subfield=false)

Returns the name of the field as selected in the panel.

void ListPresentFeaturesFirst(const objects::CSeq_entry_Handle &entry, vector< const objects::CFeatListItem * > *featlist=nullptr)

virtual void SetClusters()

CFeatureTypePanel * m_FeatureType

void OnChoiceChanged(wxCommandEvent &event)

virtual void OnSelectButton(CSegregateSetsBase *win)

virtual string GetFieldName(const bool subfield=false)

Returns the name of the field as selected in the panel.

virtual string GetFieldName(const bool subfield=false)=0

Returns the name of the field as selected in the panel.

virtual void OnSelectButton(CSegregateSetsBase *win)

void ProcessUpdateFeatEvent(wxCommandEvent &event)

void OnChoiceChanged(wxCommandEvent &event)

virtual void SetClusters()

CFieldChoicePanel * m_FieldType

void UpdateChildrenFeaturePanels(wxSizer *sizer)

virtual void OnSelectButton(CSegregateSetsBase *win)

string GetFilename(const objects::CObject_id &tag)

virtual void SetClusters()

virtual void OnSelectButton(CSegregateSetsBase *win)

virtual void SetClusters()

CStringConstraintPanel * m_StringConstraintPanel

virtual void SetClusters()

virtual void OnSelectButton(CSegregateSetsBase *win)

vector< CRef< objects::edit::CApplyObject > > GetApplyObjects(objects::CBioseq_Handle bsh)

void GetApplyObjectsValues(objects::CSeq_entry_Handle seh, const string &constraint_field, set< string > &values)

virtual void OnSelectButton(CSegregateSetsBase *win)

virtual void SetClusters()

void OnChoiceChanged(wxCommandEvent &event)

virtual void OnSelectButton(CSegregateSetsBase *win)

void OnSelect(wxCommandEvent &event)

void CollectLabels(objects::CSeq_entry_Handle seh, list< string > &strs)

map< string, vector< pair< int, string > > > m_Clusters

vector< vector< int > > m_Subsets

virtual void CreateControlsMiddle()

void OnUnselectAll(wxCommandEvent &event)

vector< vector< int > > & GetSubsets()

void SetSubsets(const set< objects::CBioseq_Handle > &selected)

void CombineLabelsAll(const CSeq_id &id, set< string > &labels)

void OnButtonMoveRight(wxCommandEvent &event)

CRBSubpanel * GetEventCaller(wxCommandEvent &event)

bool Create(wxWindow *parent, wxWindowID id=wxID_ANY, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxDefaultSize, long style=wxTAB_TRAVERSAL)

CSegregateSetsBase * GetBaseFrame()

string GetLabel(objects::CSeq_entry_Handle seh)

virtual void SetClusters()

vector< int > m_Available

void CreateControlsHeader()

virtual void OnSelectButton(CSegregateSetsBase *win)

void CreateControlsFooter()

bool MatchConstraint(CRef< objects::edit::CStringConstraint > constraint, objects::CSeq_entry_Handle seh)

void OnButtonMoveLeft(wxCommandEvent &event)

void CollectLabelsAll(CSeq_entry_Handle seh, set< string > &strs)

void CombineLabels(const objects::CSeq_id &id, vector< string > &labels)

void OnSelectAll(wxCommandEvent &event)

virtual void PopulateSet(objects::CBioseq_set &new_set, const vector< int > &subset, CBioseq_set::EClass top_class)

objects::CSeq_entry_Handle GetTopSeqEntry()

void AddUserObject(objects::CBioseq_set &se)

void TakeFromSet(objects::CBioseq_set &changed_set, CRef< objects::CSeq_entry > se)

void ReadBioseq(const objects::CSeq_entry &se)

vector< SSetSeqRecord > m_SetSeq

void MoveDescrToEntries(objects::CBioseq_set &se)

objects::CSeq_entry_Handle m_TopSeqEntry

objects::CSeq_entry_Handle GetSeqEntry(unsigned int i)

static bool ShowToolTips()

Should we show tooltips?

ICommandProccessor * m_CmdProcessor

@ ID_CSEGREGATE_FEATTYPETAB

@ ID_CSEGREGATE_NUMSETSTAB

@ ID_CSEGREGATE_STRCOMMENTTAB

@ ID_CSEGREGATE_MOLINFOTAB

@ ID_CSEGREGATE_NUMSLENTAB

@ ID_CSEGREGATE_DESCTYPETAB

void SetSubsets(const set< objects::CBioseq_Handle > &selected)

wxIcon GetIconResource(const wxString &name)

Retrieves icon resources.

virtual ~CSegregateSets()

Destructor.

vector< vector< int > > & GetSubsets()

virtual CRef< CCmdComposite > GetCommand()

void OnAccept(wxCommandEvent &event)

CSetClassPanel * m_SetClassPanel

CSegregateSets()

Constructors.

void OnCancel(wxCommandEvent &event)

void CreateControls()

Creates the controls and sizers.

void Init()

Initialises member variables.

wxBitmap GetBitmapResource(const wxString &name)

Retrieves bitmap resources.

bool Create(wxWindow *parent, wxWindowID id=ID_CSEGREGATE_SETS, const wxString &caption=_("Segregate Sets"), const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxDefaultSize, long style=wxCAPTION|wxRESIZE_BORDER|wxSYSTEM_MENU|wxCLOSE_BOX|wxTAB_TRAVERSAL)

Creation.

static const CFeatList * GetFeatList()

void GetLabel(string *const label, ELabelType label_type) const

objects::CBioseq_set::EClass GetClass()

void SetClass(objects::CBioseq_set::EClass class_type)

CRef< edit::CStringConstraint > GetStringConstraint()

void ProcessUpdateFeatEvent(wxCommandEvent &event)

void OnChoiceChanged(wxCommandEvent &event)

void OnPageChanged(wxBookCtrlEvent &event)

virtual void SetClusters()

void UpdateChildrenFeaturePanels(wxSizer *sizer)

CConstraintPanel * m_Constraint

virtual void OnSelectButton(CSegregateSetsBase *win)

CUser_field & SetValue(int value)

set a data field to a given value Int8 and TGi values can be stored into 'str' field if the value doe...

CRef< CUser_field > SetFieldRef(const string &str, const string &delim=".", const string &obj_subtype=kEmptyStr, NStr::ECase use_case=NStr::eCase)

Undo/Redo interface for editing operations.

virtual void Execute(IEditCommand *command, wxWindow *window=0)=0

const_iterator begin() const

const_iterator end() const

const_iterator find(const key_type &key) const

iterator_bool insert(const value_type &val)

const_iterator begin() const

const_iterator find(const key_type &key) const

const_iterator end() const

#define EVT_UPDATE_FEATURE_LIST(id, fn)

static DLIST_TYPE *DLIST_NAME() first(DLIST_LIST_TYPE *list)

static const char * str(char *buf, int n)

unsigned int TSeqPos

Type for sequence locations and lengths.

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Set object to copy of another one.

#define ENUM_METHOD_NAME(EnumName)

@ eContent

Untagged human-readable accession or the like.

CBioseq_Handle GetBioseqHandle(const CSeq_id &id)

Get bioseq handle by seq-id.

bool IsSetInst_Mol(void) const

TClass GetClass(void) const

CBioseq_set_Handle GetParentBioseq_set(void) const

Return a handle for the parent Bioseq-set, or null handle.

bool CanGetClass(void) const

TSeqPos GetBioseqLength(void) const

CSeq_entry_Handle GetSeq_entry_Handle(void) const

Get parent Seq-entry handle.

TInst_Mol GetInst_Mol(void) const

CConstRef< CBioseq_set > GetCompleteBioseq_set(void) const

Return the complete bioseq-set object.

CBioseq_set_Handle GetParentBioseq_set(void) const

Return a handle for the parent Bioseq-set, or null handle.

TInst_Topology GetInst_Topology(void) const

CSeq_entry_Handle GetParentEntry(void) const

Return a handle for the parent seq-entry of the bioseq.

bool IsSetClass(void) const

CScope & GetScope(void) const

Get scope this handle belongs to.

bool IsSetInst_Topology(void) const

const TId & GetId(void) const

CConstRef< CBioseq_set > GetBioseq_setCore(void) const

Return core data for the bioseq-set.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static bool IsBlank(const CTempString str, SIZE_TYPE pos=0)

Check if a string is blank (has no text).

static string IntToString(int value, TNumToStringFlags flags=0, int base=10)

Convert int to string.

static SIZE_TYPE Find(const CTempString str, const CTempString pattern, ECase use_case=eCase, EDirection direction=eForwardSearch, SIZE_TYPE occurrence=0)

Find the pattern in the string.

static string Join(const TContainer &arr, const CTempString &delim)

Join strings using the specified delimiter.

static bool StartsWith(const CTempString str, const CTempString start, ECase use_case=eCase)

Check if a string starts with a specified prefix value.

static bool SplitInTwo(const CTempString str, const CTempString delim, string &str1, string &str2, TSplitFlags flags=0)

Split a string into two pieces using the specified delimiters.

@ eReverseSearch

Search in a backward direction.

@ eCase

Case sensitive compare.

static const char label[]

bool IsSetData(void) const

the object itself Check if a value has been assigned to Data data member.

bool IsStr(void) const

Check if variant Str is selected.

bool IsSetType(void) const

type of object within class Check if a value has been assigned to Type data member.

const TStr & GetStr(void) const

Get the variant data.

const TData & GetData(void) const

Get the Data member data.

void SetType(TType &value)

Assign a value to Type data member.

const TLabel & GetLabel(void) const

Get the Label member data.

const TType & GetType(void) const

Get the Type member data.

bool CanGetLabel(void) const

Check if it is safe to call GetLabel method.

const TSeq & GetSeq(void) const

Get the variant data.

bool IsSetClass(void) const

Check if a value has been assigned to Class data member.

const TDescr & GetDescr(void) const

Get the Descr member data.

TSet & SetSet(void)

Select the variant.

bool CanGetSeq_set(void) const

Check if it is safe to call GetSeq_set method.

TClass GetClass(void) const

Get the Class member data.

const TSet & GetSet(void) const

Get the variant data.

bool IsSeq(void) const

Check if variant Seq is selected.

bool IsSetDescr(void) const

Check if a value has been assigned to Descr data member.

bool CanGetClass(void) const

Check if it is safe to call GetClass method.

bool IsSet(void) const

Check if variant Set is selected.

void ResetDescr(void)

Reset Descr data member.

void SetDescr(TDescr &value)

Assign a value to Descr data member.

TSeq_set & SetSeq_set(void)

Assign a value to Seq_set data member.

@ eClass_nuc_prot

nuc acid and coded proteins

@ eClass_genbank

converted genbank

const TUser & GetUser(void) const

Get the variant data.

const TInst & GetInst(void) const

Get the Inst member data.

TTopology GetTopology(void) const

Get the Topology member data.

bool IsSetMol(void) const

Check if a value has been assigned to Mol data member.

bool IsSetBiomol(void) const

Check if a value has been assigned to Biomol data member.

const TId & GetId(void) const

Get the Id member data.

const Tdata & Get(void) const

Get the member data.

bool IsSetInst(void) const

the sequence data Check if a value has been assigned to Inst data member.

TMol GetMol(void) const

Get the Mol member data.

E_Choice

Choice variants.

TBiomol GetBiomol(void) const

Get the Biomol member data.

bool CanGetId(void) const

Check if it is safe to call GetId method.

TUser & SetUser(void)

Select the variant.

bool IsSetId(void) const

equivalent identifiers Check if a value has been assigned to Id data member.

const TMolinfo & GetMolinfo(void) const

Get the variant data.

static string SelectionName(E_Choice index)

Retrieve selection name (for diagnostic purposes).

bool IsSetTopology(void) const

Check if a value has been assigned to Topology data member.

@ e_MaxChoice

== e_Modelev+1

@ e_User

user defined object

@ e_Molinfo

info on the molecule and techniques

@ e_not_set

No variant selected.

@ eMol_not_set

> cdna = rna

void ReportUsage(const wxString &dialog_name)

Report opening & accepting events in the editing package.

constexpr bool empty(list< Ts... >) noexcept

const struct ncbi::grid::netcache::search::fields::SIZE size

const struct ncbi::grid::netcache::search::fields::CREATED created

const CConstRef< CSeq_id > GetAccession(const CSeq_id_Handle &id_handle)

static int match(PCRE2_SPTR start_eptr, PCRE2_SPTR start_ecode, uint16_t top_bracket, PCRE2_SIZE frame_size, pcre2_match_data *match_data, match_block *mb)

#define FOR_EACH_SEQENTRY_ON_SEQSET(Itr, Var)

FOR_EACH_SEQENTRY_ON_SEQSET EDIT_EACH_SEQENTRY_ON_SEQSET.

#define EDIT_EACH_SEQENTRY_ON_SEQSET(Itr, Var)

objects::CBioseq_set_Handle parent

objects::CSeq_entry_Handle entry

objects::CBioseq_set_Handle grandparent

wxString ToWxString(const string &s)

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