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NCBI C++ ToolKit: src/gui/widgets/seq_graphic/segment_glyph.cpp Source File

component_negative_strand,

: m_IdHandle(component_id)

, m_ComponentRange(range)

, m_MappedIdHandle(mapped_id)

, m_CompNegative(component_negative_strand)

, m_HideLabel(

)

(component_negative_strand) {

(over_5p, over_3p);

(int_start > over_5p) {

(component_negative_strand) {

(!gui_info)

;

isTooltipGeneratedBySvc(

);

gui_info->GetToolTip(tt, t_title, (

)-1, &isTooltipGeneratedBySvc);

(!isTooltipGeneratedBySvc) {

gui_info->GetLinks(tt,

);

p_areas->push_back(area);

objects::CSeq_loc comp_loc;

comp_loc.SetInt().SetId().Assign(*

);

objects::CSeq_loc mapped_loc;

mapped_loc.SetInt().SetId().Assign(*mapped_id);

line_y2, color2,

);

(show_label || show_strand) {

strand_sign = strnd ?

:

;

(max_label_w > 2.0) max_label_w -= 2.0;

= strand_sign +

+

+

+ strand_sign;

(label_w > max_w) {

t_w = label_w > max_label_w ? max_label_w : label_w;

xM = vis_r.

() - t_w;

vis_r.

(), yM - label_h - 1), 0);

xM + t_w, yM - label_h - 1), 0);

(label_w > max_label_w) {

bool m_PositiveStrand

the default is true

static string GetComponentSignature(const objects::CSeq_loc &comp_loc, const objects::CSeq_loc &mapped_loc, objects::CScope *scope)

void TextOut(const CGlTextureFont *font, const char *text, TModelUnit x, TModelUnit y, bool center, bool adjust_flip=true) const

TModelRange IntersectVisible(const CSeqGlyph *obj) const

objects::CScope & GetScope()

void DrawSelection(const TModelRect &rc) const

TModelUnit SeqToScreen(const TModelUnit &size) const

convert from sequence positions to screen pixels

TModelUnit GetMaxLabelWidth(const CGlBitmapFont &font) const

In screen pixel..

TModelUnit ScreenToSeq(const TModelUnit &size) const

convert from screen pixels to sequence positions

bool IsFlippedStrand() const

bool WillLabelFit(const TModelRect &rc) const

void Draw3DQuad(TModelUnit x1, TModelUnit y1, TModelUnit x2, TModelUnit y2, const CRgbaColor &color, bool border=false) const

void DrawBackground(const TModelRect &rcm, TModelUnit border) const

class CRgbaColor provides a simple abstraction for managing colors.

ELabelPosition m_LabelPos

CGlTextureFont m_LabelFont

@ ePos_Inside

inside the rendered bar

@ ePos_Above

above the rendered bar

@ ePos_Side

always on 5' side

virtual string GetSignature() const

return signature for this glyph.

virtual CConstRef< CObject > GetObject(TSeqPos pos) const

Access the data as a CObject.

virtual bool IsClickable() const

Query if this glyph is clickable.

CSegmentConfig::TSegMapQuality GetSeqQuality() const

virtual void x_Draw() const

The default renderer for this layout object.

bool m_HideLabel

Force to hide label.

const set< TSeqRange > & GetMappedRanges() const

void GetLabel(string &label, CLabel::ELabelType type) const

virtual void GetObjects(vector< CConstRef< CObject > > &objs) const

retrieve CObjects corresponding to this CSeqGlyph.

CConstRef< objects::CSeq_id > GetSeqID(void) const

CSegmentGlyph inline methods.

virtual void x_UpdateBoundingBox()

Update the bounding box assuming children's sizes are fixed if any.

TSeqRange m_MappedRange

range on master (mapped) sequence

objects::CSeq_id_Handle m_MappedIdHandle

the seq-id we cover. this is the master seq-id

TSeqRange m_ComponentRange

range on component sequence

virtual bool HasSideLabel() const

Query if there is label and label is on the side.

objects::CSeq_id_Handle m_IdHandle

the seq-id we cover. this is the component seq-id

const objects::CSeq_loc & GetLocation(void) const

access the position of this object.

set< TSeqRange > m_MappedSeqRanges

the range on the main sequence we represent

virtual void GetHTMLActiveAreas(TAreaVector *p_areas) const

Get html active areas.

set< TSeqRange > m_SeqRanges

the range on the component we represent

virtual TSeqRange GetRange(void) const

get the total range of this object.

CSegmentGlyph(const objects::CSeq_id_Handle &component_id, const TSeqRange &range, const objects::CSeq_id_Handle &mapped_id, const TSeqRange &mapped_range, bool component_negative_strand, TSeqPos length=0)

TIntervals m_Intervals

intervals (like for features or alignments).

virtual bool NeedTooltip(const TModelPoint &p, ITooltipFormatter &tt, string &t_title) const

Check if need to show tooltip.

CRef< objects::CSeq_loc > m_Location

our mapped location

virtual void GetTooltip(const TModelPoint &p, ITooltipFormatter &tt, string &t_title) const

Get the tooltip if available.

virtual const TIntervals & GetIntervals(void) const

access sub-intervals (if any).

virtual void SetHideLabel(bool b)

Force to hide label.

virtual bool HasObject(CConstRef< CObject > obj) const

check if the wrapped object(s) is the one.

TSeqPos m_Length

length of the component sequence, independent of the chunk we use

CConstRef< CSegmentConfig > m_Config

rendering configuration for a segment.

void x_InitHTMLActiveArea(CHTMLActiveArea &area) const

initialize the basic information for a given active area.

CRenderingContext * m_Context

the rendering context

virtual void SetHeight(TModelUnit h)

virtual TModelUnit GetRight() const

virtual void SetWidth(TModelUnit w)

virtual void SetLeft(TModelUnit l)

virtual TModelUnit GetTop() const

virtual TModelUnit GetHeight() const

virtual TModelUnit GetWidth() const

virtual TModelUnit GetLeft() const

TModelRect GetModelRect() const

get the bounding box.

vector< CHTMLActiveArea > TAreaVector

virtual TModelUnit GetBottom() const

vector< TSeqRange > TIntervals

unsigned int TSeqPos

Type for sequence locations and lengths.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

void swap(NCBI_NS_NCBI::pair_base_member< T1, T2 > &pair1, NCBI_NS_NCBI::pair_base_member< T1, T2 > &pair2)

IRender & GetGl()

convenience function for getting current render manager

virtual TModelUnit TextHeight(const CGlTextureFont *font) const =0

virtual TModelUnit TextWidth(const CGlTextureFont *font, const char *text) const =0

CGlRect< TModelUnit > TModelRect

virtual void ColorC(const CRgbaColor &c)=0

Set current color (glColor{3,4}{f,d}{v,})

string Truncate(const char *text, TModelUnit w, ETruncate trunc=eTruncate_Ellipsis) const

Truncate text to the secified width.

CRgbaColor ContrastingColor(bool onlyBW=true) const

Return a color guaranteed to contrast nicely with this color.

static void GetLabel(const CObject &obj, string *label, ELabelType type=eDefault)

static CGuiObjectInfoComponent * CreateObject(SConstScopedObject &object, ICreateParams *params)

CConstRef< CSeq_id > GetSeqId(void) const

@ eContent

Untagged human-readable accession or the like.

ENa_strand GetStrand(const CSeq_loc &loc, CScope *scope=0)

Returns eNa_strand_unknown if multiple Bioseqs in loc Returns eNa_strand_other if multiple strands in...

TObjectType * GetPointer(void) const THROWS_NONE

Get pointer,.

void Reset(void)

Reset reference object.

position_type GetLength(void) const

position_type GetToOpen(void) const

CRange< TSeqPos > TSeqRange

typedefs for sequence ranges

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static const char label[]

TTo GetTo(void) const

Get the To member data.

TFrom GetFrom(void) const

Get the From member data.

static const int kSideLabelSpace

extra space for side labeling.

static const int kVertLabelSpace

vertical space between label and object.

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