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NCBI C++ ToolKit: include/gui/widgets/seq_graphic/search_utils.hpp Source File

1 #ifndef GUI_WIDGETS_SEQ_GRAPHIC___SEARCH_UTILS__HPP 2 #define GUI_WIDGETS_SEQ_GRAPHIC___SEARCH_UTILS__HPP 39 #include <unordered_map> 76  void GatherFeatures

(

const string

&

text

,

bool

match_case, objects::CBioseq_Handle bsh, objects::CScope& scope,

CFeaturePanel

* panel, vector<CMappedFeatOrObject>& search_results);

CTrackContainer - a track container in the form of layout track.

void ContainerEnd(const CTempTrackProxy *, const CTrackContainer *, bool) const

unordered_map< string, CConstIRef< INonAsnDataSource > > GetNonAsnBlobs()

bool Track(const CTempTrackProxy *, const CLayoutTrack *t, bool visible)

set< objects::CSeqFeatData::ESubtype > m_subtypes

set< string > m_annots_snp

set< string > m_annots_var

const set< string > & GetAnnots()

const set< string > & GetAnnotsSnp()

unordered_map< string, set< objects::CSeqFeatData::ESubtype > > m_named_annot_subtypes

const set< string > & GetAnnotsVar()

unordered_map< string, CConstIRef< INonAsnDataSource > > m_NonAsnBlobs

unordered_map< string, set< objects::CSeqFeatData::ESubtype > > GetNamedAnnotSubtypes()

const set< objects::CSeqFeatData::ESubtype > & GetSubtypes()

bool ContainerBegin(const CTempTrackProxy *, const CTrackContainer *, bool) const

Include a standard set of the NCBI C++ Toolkit most basic headers.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static void text(MDB_val *v)

void GetSubtypesForType(set< objects::CSeqFeatData::ESubtype > &subtypes, objects::CSeqFeatData::E_Choice feat)

TSeqRange SplitPosOrRange(const string &text)

void GatherFeatures(const string &text, bool match_case, objects::CBioseq_Handle bsh, objects::CScope &scope, CFeaturePanel *panel, vector< CMappedFeatOrObject > &search_results)

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