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NCBI C++ ToolKit: src/gui/packages/pkg_snp/bins/scatter_glyph.cpp Source File

(

bin = 0; bin < numBins; ++bin) {

(

[bin].obj.NotEmpty()) {

(objects::NSnpBins::TBinEntryList, iEntryList,

[bin].obj->m_EntryList) {

pvalue(-

((*iEntryList)->pvalue));

p_areas->push_back(area);

PixelScale(Height / AxisRange);

sColorKey(

);

(

bin = 0; bin < numBins; bin++)

(

[bin].obj.NotEmpty()) {

(objects::NSnpBins::TBinEntryList, iEntryList,

[bin].obj->m_EntryList) {

pvalue(-

((*iEntryList)->pvalue));

pos((*iEntryList)->pos);

y1 = line_y2 - (pvalue -

) * PixelScale;

(dist_x < min_dist) {

(; x <

(); x += dist_x) {

line_y2 - 1,

);

line_y1 + font_height + 1,

);

gl.

(0.0f, 0.0f,0.0f, 1.0f);

CConstRef< CSeqGraphicConfig > GetGlobalConfig() const

expose global configuration

static CGuiRegistry & GetInstance()

access the application-wide singleton

string m_Descr

description that can be used as label or tooltip

@ fNoPin

tooltip is not pinnable

@ fNoSelection

the object can't be selected

@ fTooltipEmbedded

tooltip embedded

int m_Flags

area flags, will need to replace m_Type

bool m_PositiveStrand

the default is true

class CRegistryReadView provides a nested hierarchical view at a particular key.

void DrawDisk(const TModelPoint &p, TModelUnit radius, GLint from=0, GLint to=360) const

void TextOut(const CGlTextureFont *font, const char *text, TModelUnit x, TModelUnit y, bool center, bool adjust_flip=true) const

void DrawLine(TModelUnit x1, TModelUnit y1, TModelUnit x2, TModelUnit y2) const

TModelUnit ScreenToSeq(const TModelUnit &size) const

convert from screen pixels to sequence positions

class CRgbaColor provides a simple abstraction for managing colors.

static CRegistryReadView GetColorReadView(const CGuiRegistry &reg, const string &base_key, const string &sect, const string &key, const string &def_sect="")

Create a read view specifically for 'Color' section.

static void GetColor(const CRegistryReadView &view, const string &key, CRgbaColor &color)

string x_GetDescription() const

virtual void GetTooltip(const TModelPoint &, ITooltipFormatter &tt, string &t_title) const

Get the tooltip if available.

string x_GetColorTheme() const

virtual void x_UpdateBoundingBox()

Update the bounding box assuming children's sizes are fixed if any.

virtual bool OnLeftDblClick(const TModelPoint &)

CScatterPlotGlyph(const TMap &map, const objects::CSeq_loc &loc)

virtual TSeqRange GetRange(void) const

get the total range of this object.

virtual bool IsClickable() const

Query if this glyph is clickable.

virtual bool NeedTooltip(const TModelPoint &p, ITooltipFormatter &tt, string &t_title) const

Check if need to show tooltip.

CConstRef< objects::CSeq_loc > m_Location

virtual void GetHTMLActiveAreas(TAreaVector *p_areas) const

Get html active areas.

virtual void x_Draw() const

The default renderer for this layout object.

class CSeqGlyph defines an interface that wraps a rectilinear abstract object.

void x_InitHTMLActiveArea(CHTMLActiveArea &area) const

initialize the basic information for a given active area.

CRenderingContext * m_Context

the rendering context

virtual void SetHeight(TModelUnit h)

virtual TModelUnit GetRight() const

virtual void SetWidth(TModelUnit w)

virtual void SetLeft(TModelUnit l)

virtual TModelUnit GetTop() const

virtual TModelUnit GetWidth() const

virtual TModelUnit GetLeft() const

vector< CHTMLActiveArea > TAreaVector

const CSeqGlyph * GetParent(void) const

const string & GetColorTheme() const

unsigned int TSeqPos

Type for sequence locations and lengths.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

IRender & GetGl()

convenience function for getting current render manager

void Color4f(GLfloat r, GLfloat g, GLfloat b, GLfloat a)

virtual TModelUnit GetMetric(EMetric metric, const char *text=NULL, int len=-1) const

CGlPoint< TModelUnit > TModelPoint

virtual void ColorC(const CRgbaColor &c)=0

Set current color (glColor{3,4}{f,d}{v,})

virtual void AddRow(const string &sContents="", unsigned colspan=2)=0

add a row with a cell, spanning across all columns

float GetBlue(void) const

float GetGreen(void) const

static string PValueAsColorKey(double pvalue)

preferred colorings for a given pvalue

static string PValueToString(double pvalue)

virtual bool IsEmpty() const =0

Indicates if the tooltip is empty.

static const int c_BinHeight

float GetRed(void) const

Get specific channels in floating point values.

position_type GetLength(void) const

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

TFrom GetFrom(void) const

Get the From member data.

static void text(MDB_val *v)

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