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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/rnanamepanel_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/packages/pkg_sequence_edit/rnanamepanel.cpp Source File

41 #include <wx/checkbox.h> 84

wxWindowID

id

const

wxPoint& pos,

const

wxSize&

size

long

style )

86

m_WizardType (wizard_type),

102

CBulkCmdPanel::Create( parent,

id

, pos,

size

, style );

107

GetSizer()->SetSizeHints(

this

);

139 "16S ribosomal RNA"

140 "16S-23S ribosomal RNA intergenic spacer"

148 "small subunit ribosomal RNA"

149 "large subunit ribosomal RNA" 156 "18S ribosomal RNA"

157 "small subunit ribosomal RNA"

158 "internal transcribed spacer 1"

159 "5.8S ribosomal RNA"

160 "internal transcribed spacer 2"

161 "28S ribosomal RNA"

162 "26S ribosomal RNA"

163 "large subunit ribosomal RNA" 178

wxBoxSizer* itemBoxSizer2 =

new

wxBoxSizer(wxVERTICAL);

179

itemCBulkCmdPanel1->SetSizer(itemBoxSizer2);

181

wxStaticBox* itemStaticBoxSizer3Static =

new

wxStaticBox(itemCBulkCmdPanel1,

wxID_ANY

(

"RNA Name"

));

182 m_RNANameSizer

new

wxStaticBoxSizer(itemStaticBoxSizer3Static, wxVERTICAL);

183

itemBoxSizer2->Add(

m_RNANameSizer

, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

240

box =

new

wxCheckBox ( itemCBulkCmdPanel1,

wxID_ANY

(

"Something else"

));

243

btn =

new

wxRadioButton ( itemCBulkCmdPanel1,

wxID_ANY

(

"Something else"

));

249 m_OtherLabel

new

wxTextCtrl( itemCBulkCmdPanel1,

wxID_ANY

, wxEmptyString, wxDefaultPosition, wxSize(200, -1), 0 );

299

NStr::Equal

(rna_name.substr(5),

" subunit ribosomal RNA"

)) {

302

string::iterator cp = rna_name.begin();

307 while

(cp != rna_name.end() &&

isdigit

(*cp)) {

311 if

(

NStr::Equal

(rna_name.substr(pos),

"S ribosomal RNA"

)) {

327

string::iterator cp = rna_name.begin();

332 while

(cp != rna_name.end() &&

isdigit

(*cp)) {

336 if

(

NStr::Equal

(rna_name.substr(pos, 2),

"S-"

)) {

343 while

(cp != rna_name.end() &&

isdigit

(*cp)) {

347 if

(

NStr::Equal

(rna_name.substr(pos),

"S ribosomal RNA intergenic spacer"

)) {

360 string

rna_name =

""

;

363

vector<string> labels;

365 while

(pos < itemList.size()) {

366

wxCheckBox* c_btn =

dynamic_cast<

wxCheckBox*

>

(itemList[pos]->GetWindow());

368 if

(c_btn->GetValue()) {

373

labels.push_back(

label

);

378 if

(labels.size() == 1) {

379

rna_name = labels[0];

380

}

else if

(labels.size() == 2) {

381

rna_name =

"contains "

+ labels[0] +

" and "

+ labels[1];

382

}

else if

(labels.size() > 2) {

383

rna_name =

"contains "

;

384 for

(

size_t i

= 0;

< labels.size() - 1;

++) {

385

rna_name += labels[

] +

", "

;

387

rna_name +=

"and "

+ labels[labels.size() - 1];

395 string

rna_name =

""

;

398 while

(pos < itemList.size()) {

399

wxRadioButton* r_btn =

dynamic_cast<

wxRadioButton*

>

(itemList[pos]->GetWindow());

401 if

(r_btn->GetValue()) {

418 string

rna_name =

""

;

435

objects::CBioseq_CI b_iter(

m_TopSeqEntry

, objects::CSeq_inst::eMol_na);

436 for

( ; b_iter ; ++b_iter ) {

439

new_feat->SetData().SetRna().SetType(objects::CRNA_ref::eType_rRNA);

440

new_feat->SetData().SetRna().SetExt().SetName(rna_name);

442

new_feat->SetData().SetRna().SetType(objects::CRNA_ref::eType_other);

444

new_feat->SetData().SetRna().SetExt().SetGen().SetProduct(rna_name);

446

new_feat->SetComment(rna_name);

451

new_feat_id->Assign(*(b_iter->GetCompleteBioseq()->GetId().front()));

452

new_feat->SetLocation().SetInt().SetId(*new_feat_id);

453

new_feat->SetLocation().SetInt().SetFrom(0);

454

new_feat->SetLocation().SetInt().SetTo(b_iter->GetBioseqLength() - 1);

457

objects::CSeq_entry_Handle seh = b_iter->GetSeq_entry_Handle();

467 return "You must specify the name for the RNA feature to be created."

;

473 bool

enable =

false

;

477 while

(pos < itemList.size() && !enable) {

478

wxRadioButton* r_btn =

dynamic_cast<

wxRadioButton*

>

(itemList[pos]->GetWindow());

484

wxCheckBox* c_btn =

dynamic_cast<

wxCheckBox*

>

(itemList[pos]->GetWindow());

@ eExtreme_Biological

5' and 3'

User-defined methods of the data storage class.

EVT_CHECKBOX(ID_CADJUSTFEATURES_CHECKBOX, CAdjustFeaturesForGaps::OnKnownUnknownSelected) EVT_CHECKBOX(ID_CADJUSTFEATURES_CHECKBOX1

objects::CSeq_entry_Handle m_TopSeqEntry

string x_GetSingleElementName()

string x_GetMultiElementName()

~CRNANamePanel()

Destructor.

wxIcon GetIconResource(const wxString &name)

Retrieves icon resources.

virtual CRef< CCmdComposite > GetCommand()

virtual string GetErrorMessage()

static bool ShowToolTips()

Should we show tooltips?

void CreateControls()

Creates the controls and sizers.

CSourceRequirements::EWizardSrcType m_SrcType

bool Create(wxWindow *parent, wxWindowID id=10034, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(400, 300), long style=wxTAB_TRAVERSAL)

Creation.

void OnRNATypeSelected(wxCommandEvent &event)

wxStaticBoxSizer * m_RNANameSizer

void Init()

Initialises member variables.

CRNANamePanel()

Constructors.

wxTextCtrl * m_OtherLabel

wxBitmap GetBitmapResource(const wxString &name)

Retrieves bitmap resources.

@ eWizardSrcType_cultured_fungus

@ eWizardSrcType_bacteria_or_archaea

@ eWizardSrcType_uncultured_fungus

@ eWizardSrcType_vouchered_fungus

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static bool IsBlank(const CTempString str, SIZE_TYPE pos=0)

Check if a string is blank (has no text).

static bool StartsWith(const CTempString str, const CTempString start, ECase use_case=eCase)

Check if a string starts with a specified prefix value.

static bool Equal(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2, ECase use_case=eCase)

Test for equality of a substring with another string.

static const char label[]

constexpr bool empty(list< Ts... >) noexcept

const struct ncbi::grid::netcache::search::fields::SIZE size

const int s_NumRNAOrganelle

static bool s_IsrRNA(string rna_name)

static bool s_IsRNASpacer(string rna_name)

const int s_NumRNABacteriaArchaea

static string s_RNABacteriaArchaea[]

static string s_RNAOrganelle[]

static string s_RNAFungal[]

bool AlreadyHasFeature(objects::CBioseq_Handle bh, string key, string comment)

wxString ToWxString(const string &s)

string ToStdString(const wxString &s)

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