Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/rna__edit_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/edit/rna_edit.cpp Source File

(

.size() != 9)

(

.size() == 1)

=

+ line;

(!

.empty())

=

+ line;

accession =

[0];

its1 =

[3];

r58S =

[4];

its2 =

[5];

strand =

[8];

=

+ accession;

(!

.empty() &&

!=

&&

!=

)

=

+accession+

+

;

ssu_present(

);

lsu_present(

);

ssu_too_large(

);

lsu_too_large(

);

r58S_too_large(

);

its1_span(

);

its2_span(

);

(ssu, starts, stops, spans);

(its1, starts, stops, spans);

(r58S, starts, stops, spans);

(its2, starts, stops, spans);

(lsu, starts, stops, spans);

its1_span = spans[1];

its2_span = spans[3];

vector<string> comments;

(ssu !=

)

comments.push_back(

);

ssu_too_large =

(ssu, 2200, 0, starts, stops, spans, bioseq_length);

(its1 !=

)

comments.push_back(

);

(r58S !=

)

comments.push_back(

);

r58S_too_large =

(r58S, 200, 2, starts, stops, spans, bioseq_length);

(its2 !=

)

comments.push_back(

);

(lsu !=

)

comments.push_back(

);

lsu_too_large =

(lsu, 5100, 4, starts, stops, spans, bioseq_length);

(its1_span && its2_span && (r58S ==

|| r58S ==

|| r58S ==

))

=

+accession;

=

+accession;

=

+accession;

=

+accession;

(comments.size())

0 : comment =

;

;

(!ssu_present && !lsu_present)

comment =

+comments.front();

2 : comment =

+ comments[0]+

+comments[1];

;

default : comment =

+comments[0];

(

j=1; j<comments.size()-1;j++) comment +=

+comments[j]; comment +=

+comments.back();

;

(comments.size() == 1 && (ssu_present || lsu_present))

(

.size() == 2)

starts.push_back(start);

stops.push_back(stop);

spans.push_back(span);

vector<int>& starts,

vector<int>& stops,

vector<bool>& spans,

start = starts[

];

end = stops[

];

length = end - start + 1;

length > max_length;

(

==

)

(

j =

- 1; j >= 0; j--)

start = stops[j] + 1;

end = bioseq_length;

length = end - start + 1;

length > max_length;

(

==

)

end = bioseq_length;

(

j =

+ 1; j < spans.size(); j++)

length = end - start + 1;

length > max_length;

loc->

().SetFrom(0);

new_rrna->

().SetRna().SetRnaProductName(comment, remainder);

loc->

().SetFrom(0);

(edit::CSeqIdGuesser::DoesSeqMatchConstraint(*bi,constraint))

@ eExtreme_Positional

numerical value

CBioseq_Handle x_GetBioseqHandleFromIdGuesser(const string &id_str, objects::CSeq_entry_Handle tse)

CRef< CSeq_feat > x_CreateMiscRna(const string &comment, CBioseq_Handle bsh)

void GetSpan(const string &str, vector< int > &starts, vector< int > &stops, vector< bool > &spans)

CRef< CSeq_feat > ParseLine()

CRef< CSeq_feat > x_ParseLine(const CTempString &line, CSeq_entry_Handle tse, CBioseq_Handle &bsh, bool &negative, string &msg)

CRef< CSeq_feat > x_CreateRRna(const string &comment, CBioseq_Handle bsh)

bool IsLengthTooLarge(const string &str, int max_length, int i, const vector< int > &starts, const vector< int > &stops, const vector< bool > &spans, int bioseq_length)

namespace ncbi::objects::

CTempString implements a light-weight string on top of a storage buffer whose lifetime management is ...

Include a standard set of the NCBI C++ Toolkit most basic headers.

static vector< string > arr

static const char * str(char *buf, int n)

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

static CRef< ILineReader > New(const string &filename)

Return a new ILineReader object corresponding to the given filename, taking "-" (but not "....

void SetId(CSeq_id &id)

set the 'id' field in all parts of this location

void SetPartialStart(bool val, ESeqLocExtremes ext)

set / remove e_Lim fuzz on start or stop (lt/gt - indicating partial interval)

void SetPartialStop(bool val, ESeqLocExtremes ext)

TSeqPos GetBioseqLength(void) const

CConstRef< CSeq_id > GetSeqId(void) const

Get id which can be used to access this bioseq handle Throws an exception if none is available.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

static int StringToInt(const CTempString str, TStringToNumFlags flags=0, int base=10)

Convert string to int.

static list< string > & Split(const CTempString str, const CTempString delim, list< string > &arr, TSplitFlags flags=0, vector< SIZE_TYPE > *token_pos=NULL)

Split a string using specified delimiters.

static void TruncateSpacesInPlace(string &str, ETrunc where=eTrunc_Both)

Truncate whitespace in a string (in-place)

@ fConvErr_NoThrow

Do not throw an exception on error.

void SetLocation(TLocation &value)

Assign a value to Location data member.

void SetComment(const TComment &value)

Assign a value to Comment data member.

void SetPartial(TPartial value)

Assign a value to Partial data member.

void SetData(TData &value)

Assign a value to Data data member.

@ eMol_na

just a nucleic acid

static SLJIT_INLINE sljit_ins msg(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4