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NCBI C++ ToolKit: src/objtools/readers/rm_reader.cpp File Reference

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Definition at line 88 of file rm_reader.cpp.

Translate RepeatMasker output to INSDC standard nomenclature for repeats.

This includes remapping repeat family to satellite and mobile element qualifiers, as appropriate.

Available INSDC qualifiers are: rpt_family, rpt_type, rpt_unit_seq, satellite, standard_name

Definition at line 401 of file rm_reader.cpp.

References NStr::EqualNocase(), IRepeat::GetRptClass(), IRepeat::GetRptFamily(), IRepeat::GetRptName(), s_SetQual(), and val.

Referenced by CRepeatToFeat::operator()().

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