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NCBI C++ ToolKit: src/gui/packages/pkg_sequence_edit/rm_cdd.cpp Source File

;

map<objects::CBioseq_Handle, set<objects::CSeq_feat_Handle> > product_to_cds;

end_str =

, ext_str;

(

fci(tse); fci; ++fci) {

& sf = fci->GetOriginalFeature();

(ext_str.size() > end_str.size()

&& ext_str.substr(0, 3) ==

&& ext_str.substr(ext_str.size() - end_str.size()) == end_str) {

( (*it)->GetDb() !=

) new_sf->

().push_back(*it);

add_to_cmd<CSeq_feat>((CObject*)(&sf),(CObject*)(new_sf.

()), composite);

void AddCommand(IEditCommand &command)

virtual void apply_to(const CSeq_entry_Handle &tse, CRef< CCmdComposite > composite)

namespace ncbi::objects::

CConstRef< CDbtag > GetNamedDbxref(const CTempString &db) const

Return a specified DB xref.

CTempString implements a light-weight string on top of a storage buffer whose lifetime management is ...

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Set object to copy of another one.

CScope & GetScope(void) const

Get scope this handle belongs to.

TObjectType * GetPointer(void) THROWS_NONE

Get pointer,.

bool NotEmpty(void) const THROWS_NONE

Check if CConstRef is not empty – pointing to an object and has a non-null value.

bool IsStr(void) const

Check if variant Str is selected.

const TStr & GetStr(void) const

Get the variant data.

const TType & GetType(void) const

Get the Type member data.

bool CanGetDbxref(void) const

Check if it is safe to call GetDbxref method.

TDbxref & SetDbxref(void)

Assign a value to Dbxref data member.

const TDbxref & GetDbxref(void) const

Get the Dbxref member data.

bool CanGetExt(void) const

Check if it is safe to call GetExt method.

void ResetDbxref(void)

Reset Dbxref data member.

const TExt & GetExt(void) const

Get the Ext member data.

Magic spell ;-) needed for some weird compilers... very empiric.

void GetProductToCDSMap(objects::CScope &scope, map< objects::CBioseq_Handle, set< objects::CSeq_feat_Handle > > &product_to_cds)

CRef< CCmdComposite > GetDeleteFeatureCommand(const objects::CSeq_feat_Handle &fh, bool remove_proteins=true)

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