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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/revcomp__sequences_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/packages/pkg_sequence_edit/revcomp_sequences.cpp Source File

wxWindowID

,

wxString& caption,

wxPoint& pos,

wxSize&

,

style )

(parent,

, caption, pos,

, style);

SetExtraStyle(wxWS_EX_BLOCK_EVENTS);

wxDialog::Create( parent,

, caption, pos,

, style );

GetSizer()->SetSizeHints(

);

Centre(wxBOTH|wxCENTRE_ON_SCREEN);

SetSize(wxSize(280, 750));

wxBoxSizer* itemBoxSizer2 =

wxBoxSizer(wxVERTICAL);

itemDialog1->SetSizer(itemBoxSizer2);

wxBoxSizer* itemBoxSizer3 =

wxBoxSizer(wxHORIZONTAL);

itemBoxSizer2->Add(itemBoxSizer3, 1, wxGROW|wxALL, 5);

=

wxListCtrl( itemDialog1,

, wxDefaultPosition, wxDefaultSize, wxLC_REPORT );

itemBoxSizer3->Add(

, 1, wxGROW|wxALL, 5);

->InsertColumn(0,wxEmptyString,wxLIST_FORMAT_LEFT);

objects::CBioseq_CI b_iter(

, objects::CSeq_inst::eMol_na);

( ; b_iter ; ++b_iter )

->SetColumnWidth(0, wxLIST_AUTOSIZE);

=

wxCheckBox( itemDialog1,

,

(

), wxDefaultPosition, wxDefaultSize, 0 );

=

wxCheckBox( itemDialog1,

,

(

), wxDefaultPosition, wxDefaultSize, 0 );

itemBoxSizer2->Add(

, 0, wxALIGN_LEFT|wxALL, 5);

wxBoxSizer* itemBoxSizer12 =

wxBoxSizer(wxHORIZONTAL);

itemBoxSizer2->Add(itemBoxSizer12, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

wxButton* itemButton1 =

wxButton( itemDialog1,

,

(

), wxDefaultPosition, wxDefaultSize, 0 );

itemBoxSizer12->Add(itemButton1, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

wxButton* itemButton2 =

wxButton( itemDialog1,

,

(

), wxDefaultPosition, wxDefaultSize, 0 );

itemBoxSizer12->Add(itemButton2, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

wxButton* itemButton3 =

wxButton( itemDialog1,

,

(

), wxDefaultPosition, wxDefaultSize, 0 );

itemBoxSizer12->Add(itemButton3, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

wxBoxSizer* itemBoxSizer15 =

wxBoxSizer(wxHORIZONTAL);

itemBoxSizer2->Add(itemBoxSizer15, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

wxButton* itemButton13 =

wxButton( itemDialog1, wxID_OK,

(

), wxDefaultPosition, wxDefaultSize, 0 );

itemBoxSizer15->Add(itemButton13, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

wxButton* itemButton14 =

wxButton( itemDialog1, wxID_CANCEL,

(

), wxDefaultPosition, wxDefaultSize, 0 );

itemBoxSizer15->Add(itemButton14, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

modified =

;

found_alignments =

;

item =

->GetNextItem(item, wxLIST_NEXT_ALL, wxLIST_STATE_SELECTED);

( item == -1 )

;

=

(

->GetItemData(item));

(!modified)

cmd_null;

(found_alignments)

wxMessageBox(

(

),

(

), wxOK | wxICON_ERROR,

);

found_alignments =

;

objects::CBioseq_CI b_iter(

, objects::CSeq_inst::eMol_na);

( ; b_iter ; ++b_iter )

found_alignments |=

(bsh,

, tse, update_seq, update_feat, update_graph);

(found_alignments)

wxMessageBox(

(

),

(

), wxOK | wxICON_ERROR,

);

found_alignments =

;

new_inst->Assign(bsh.

());

->AddCommand(*cmd_inst);

(; feat_ci; ++feat_ci)

(; graph_ci; ++graph_ci)

(

.Which() )

->AddCommand(*chgGraph);

(; align_ci; ++align_ci)

(

= 0;

< num_rows;

++)

found_alignments =

;

(found_alignments)

found_alignments;

(!constraint)

;

item =

->GetNextItem(item, wxLIST_NEXT_ALL, wxLIST_STATE_DONTCARE);

( item == -1 )

;

=

(

->GetItemData(item));

((!id_str.empty() && constraint->DoesTextMatch(id_str)) ||

(!accession.empty() && constraint->DoesTextMatch(accession)))

->SetItemState(item, wxLIST_STATE_SELECTED, wxLIST_STATE_SELECTED);

item =

->GetNextItem(item, wxLIST_NEXT_ALL, wxLIST_STATE_DONTCARE);

( item == -1 )

;

->SetItemState(item, wxLIST_STATE_SELECTED, wxLIST_STATE_SELECTED);

item =

->GetNextItem(item, wxLIST_NEXT_ALL, wxLIST_STATE_SELECTED);

( item == -1 )

;

->SetItemState(item, 0, wxLIST_STATE_SELECTED);

CRevCompSequencesDlg()

Constructors.

vector< CBioseq_Handle > m_Entries

void apply(CSeq_entry_Handle tse, ICommandProccessor *cmdProcessor, string title, bool update_seq, bool update_feat, bool update_graph)

static bool ShowToolTips()

Should we show tooltips?

void OnSelect(wxCommandEvent &event)

void OnSelectAll(wxCommandEvent &event)

void Init()

Initialises member variables.

CRef< CCmdComposite > GetCommand()

wxBitmap GetBitmapResource(const wxString &name)

Retrieves bitmap resources.

void OnUnselectAll(wxCommandEvent &event)

bool Create(wxWindow *parent, wxWindowID id=11300, const wxString &caption=_("Reverse Complement"), const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxDefaultSize, long style=wxCAPTION|wxRESIZE_BORDER|wxSYSTEM_MENU|wxCLOSE_BOX|wxTAB_TRAVERSAL)

Creation.

bool RevCompBioSeq(CBioseq_Handle bsh, CRef< CCmdComposite > cmd, CSeq_entry_Handle tse, bool update_seq, bool update_feat, bool update_graph)

CStringConstraintPanel * m_StringConstraintPanel

wxCheckBox * m_CheckSequence

wxIcon GetIconResource(const wxString &name)

Retrieves icon resources.

objects::CSeq_entry_Handle m_TopSeqEntry

~CRevCompSequencesDlg()

Destructor.

void CreateControls()

Creates the controls and sizers.

TDim CheckNumRows(void) const

Validatiors.

const CSeq_id & GetSeq_id(TDim row) const

Get seq-id (the first one if segments have different ids).

namespace ncbi::objects::

CRef< edit::CStringConstraint > GetStringConstraint()

Undo/Redo interface for editing operations.

virtual void Execute(IEditCommand *command, wxWindow *window=0)=0

void ReverseComplement(const BidirectionalIterator &first, const BidirectionalIterator &last)

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Set object to copy of another one.

void GetLabel(string *label, ELabelType type=eDefault, TLabelFlags flags=fLabel_Default) const

Append a label for this Seq-id to the supplied string.

CConstRef< CSeq_id > GetSeqId(void) const

@ eContent

Untagged human-readable accession or the like.

const CSeq_id & GetId(const CSeq_loc &loc, CScope *scope)

If all CSeq_ids embedded in CSeq_loc refer to the same CBioseq, returns the first CSeq_id found,...

@ eGetId_Best

return the "best" gi (uses FindBestScore(), with CSeq_id::CalculateScore() as the score function

CScope & GetScope(void) const

Get scope this handle belongs to.

bool IsSynonym(const CSeq_id &id) const

Check if this id can be used to obtain this bioseq handle.

const TInst & GetInst(void) const

const CSeq_feat & GetOriginalFeature(void) const

Get original feature with unmapped location/product.

const CSeq_graph & GetOriginalGraph(void) const

Get original graph with unmapped location/product.

CSeq_graph_Handle GetSeq_graph_Handle(void) const

Get original graph handle.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

void SetGraph(TGraph &value)

Assign a value to Graph data member.

void SetLoc(TLoc &value)

Assign a value to Loc data member.

void ReverseComplementFeature(CSeq_feat &feat, CScope &scope)

void ReverseComplementLocation(CSeq_loc &loc, CScope &scope)

const string version

version string

const struct ncbi::grid::netcache::search::fields::SIZE size

USING_SCOPE(ncbi::objects)

#define row(bind, expected)

wxString ToWxString(const string &s)

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