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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/restore__rna__edit_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/packages/pkg_sequence_edit/restore_rna_edit.cpp Source File

wxWindowID

,

wxString& caption,

wxPoint& pos,

wxSize&

,

style )

: m_TopSeqEntry(seh), m_CmdProcessor(cmdProcessor)

(parent,

, caption, pos,

, style);

SetExtraStyle(wxWS_EX_VALIDATE_RECURSIVELY|wxWS_EX_BLOCK_EVENTS);

wxDialog::Create( parent,

, caption, pos,

, style );

GetSizer()->SetSizeHints(

);

wxBoxSizer* itemBoxSizer2 =

wxBoxSizer(wxVERTICAL);

itemDialog1->SetSizer(itemBoxSizer2);

wxBoxSizer* itemBoxSizer3 =

wxBoxSizer(wxHORIZONTAL);

itemBoxSizer2->Add(itemBoxSizer3, 0, wxGROW|wxALL, 5);

wxStaticText* itemStaticText4 =

wxStaticText( itemDialog1, wxID_STATIC,

(

), wxDefaultPosition, wxDefaultSize, 0 );

itemBoxSizer3->Add(itemStaticText4, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

itemBoxSizer3->Add(

, 1, wxALIGN_CENTER_VERTICAL|wxALL, 5);

wxBoxSizer* itemBoxSizer6 =

wxBoxSizer(wxHORIZONTAL);

itemBoxSizer2->Add(itemBoxSizer6, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

wxButton* itemButton7 =

wxButton( itemDialog1,

,

(

), wxDefaultPosition, wxDefaultSize, 0 );

itemBoxSizer6->Add(itemButton7, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

wxButton* itemButton8 =

wxButton( itemDialog1, wxID_CANCEL,

(

), wxDefaultPosition, wxDefaultSize, 0 );

itemBoxSizer6->Add(itemButton8, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

=

wxCheckBox( itemDialog1,

,

(

), wxDefaultPosition, wxDefaultSize, 0 );

itemBoxSizer6->Add(

, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

name =

->GetValue().ToStdString();

(!cds->IsSetProduct())

*

= cds->GetProduct().GetId();

(prot_seq.empty() || prot_seq.front() ==

)

(name == *name_it) {

new_cds->

(*cds->GetOriginalSeq_feat());

->AddCommand(*chgFeat);

new_inst->Assign(bsh.

());

(new_inst->IsSetSeq_data()) {

new_inst->ResetSeq_data();

new_inst->ResetExt();

new_inst->SetRepr(objects::CSeq_inst::eRepr_raw);

new_inst->SetSeq_data().SetNcbieaa().Set(prot_seq);

new_inst->SetLength(

(prot_seq.length()));

->AddCommand(*chgInst);

static bool FixRNAEditingCodingRegion(CSeq_feat &cds)

From GB-7563 An action has been requested that will do the following: 1.

void Init()

Initialises member variables.

objects::CSeq_entry_Handle m_TopSeqEntry

void OnApply(wxCommandEvent &event)

static bool ShowToolTips()

Should we show tooltips?

~CRestoreRNAediting()

Destructor.

ICommandProccessor * m_CmdProcessor

void CreateControls()

Creates the controls and sizers.

wxBitmap GetBitmapResource(const wxString &name)

Retrieves bitmap resources.

bool Create(wxWindow *parent, wxWindowID id=wxID_ANY, const wxString &caption=_("Restore RNA editing of coding region"), const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(400, 300), long style=wxCAPTION|wxRESIZE_BORDER|wxSYSTEM_MENU|wxCLOSE_BOX|wxTAB_TRAVERSAL)

Creation.

wxIcon GetIconResource(const wxString &name)

Retrieves icon resources.

CRestoreRNAediting()

Constructors.

namespace ncbi::objects::

Undo/Redo interface for editing operations.

virtual void Execute(IEditCommand *command, wxWindow *window=0)=0

unsigned int TSeqPos

Type for sequence locations and lengths.

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Set object to copy of another one.

CConstRef< CBioseq > GetCompleteBioseq(void) const

Get the complete bioseq.

virtual CConstRef< CSeq_feat > GetSeq_feat(void) const

const TInst & GetInst(void) const

const CSeq_feat_Handle & GetSeq_feat_Handle(void) const

Get original feature handle.

void GetSeqData(TSeqPos start, TSeqPos stop, string &buffer) const

Fill the buffer string with the sequence data for the interval [start, stop).

void SetCoding(TCoding coding)

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static void TruncateSpacesInPlace(string &str, ETrunc where=eTrunc_Both)

Truncate whitespace in a string (in-place)

bool IsSetData(void) const

the specific data Check if a value has been assigned to Data data member.

bool IsProt(void) const

Check if variant Prot is selected.

const TData & GetData(void) const

Get the Data member data.

const TProt & GetProt(void) const

Get the variant data.

@ e_Ncbieaa

extended ASCII 1 letter aa codes

const struct ncbi::grid::netcache::search::fields::SIZE size

#define ID_RESTORE_PROTEINNAME

#define ID_RESTORE_RNA_EDIT_APPLY

Utility macros and typedefs for exploring NCBI objects from seqfeat.asn.

#define FOR_EACH_NAME_ON_PROTREF(Itr, Var)

FOR_EACH_NAME_ON_PROTREF EDIT_EACH_NAME_ON_PROTREF.

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