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NCBI C++ ToolKit: src/app/pubseq_gateway/server/resolve_processor.cpp Source File

std::placeholders;

shared_ptr<CPSGS_Request> request,

shared_ptr<CPSGS_Reply> reply,

this, _1, _2, _3, _4),

shared_ptr<CPSGS_Reply> reply)

startup_data_state = app->GetStartupDataState();

(request->NeedTrace()) {

+

request->GetStartTimestamp());

shared_ptr<CPSGS_Reply> reply,

& message)

message, status,

,

effective_output_format);

overall_final_state =

;

(details->InPeek()) {

details->SetInPeek(

);

overall_final_state |=

(details, need_wait);

details->SetInPeek(

);

(overall_final_state) {

(!fetch_details->GetLoader())

final_state =

;

(!fetch_details->ReadFinished()) {

final_state = fetch_details->GetLoader()->Wait();

fetch_details->SetReadFinished();

(fetch_details->GetLoader()->HasError() &&

= fetch_details->GetLoader()->LastError();

app->GetCounters().Increment(

,

fetch_details->GetLoader()->ClearError();

fetch_details->SetReadFinished();

const string kCassandraProcessorGroupName

const string kCassandraProcessorEvent

EPSGS_AccessionAdjustmentResult AdjustBioseqAccession(SBioseqResolution &bioseq_resolution)

CRequestStatus::ECode CountError(CCassFetch *fetch_details, CRequestStatus::ECode status, int code, EDiagSev severity, const string &message, EPSGS_LoggingFlag logging_flag, EPSGS_StatusUpdateFlag status_update_flag)

void UpdateOverallStatus(CRequestStatus::ECode status)

bool IsCassandraProcessorEnabled(shared_ptr< CPSGS_Request > request) const

list< unique_ptr< CCassFetch > > m_FetchDetails

bool AreAllFinishedRead(void) const

void UnlockWaitingProcessor(void)

IPSGS_Processor::EPSGS_Status GetStatus(void) override

Tells the processor status (if it has finished or in progress)

void SignalFinishProcessing(void)

void ResolveInputSeqId(void)

virtual string GetGroupName(void) const

Tells the processor group name.

virtual ~CPSGS_ResolveProcessor()

void x_OnSeqIdResolveFinished(SBioseqResolution &&bioseq_resolution)

virtual IPSGS_Processor * CreateProcessor(shared_ptr< CPSGS_Request > request, shared_ptr< CPSGS_Reply > reply, TProcessorPriority priority) const

Create processor to fulfil PSG request using the data source.

SPSGS_ResolveRequest * m_ResolveRequest

virtual void Process(void)

Main processing function.

virtual EPSGS_Status GetStatus(void)

Tells the processor status (if it has finished or in progress)

virtual string GetName(void) const

Tells the processor name (used in logging and tracing)

void x_SendBioseqInfo(SBioseqResolution &bioseq_resolution)

void x_OnSeqIdResolveError(CRequestStatus::ECode status, int code, EDiagSev severity, const string &message)

void x_Peek(bool need_wait)

void x_OnResolutionGoodData(void)

virtual bool CanProcess(shared_ptr< CPSGS_Request > request, shared_ptr< CPSGS_Reply > reply) const

Tells if processor can process the given request.

virtual void ProcessEvent(void)

Called when an event happened which may require to have some processing.

static CPubseqGatewayApp * GetInstance(void)

Interface class (and self-factory) for request processor objects that can retrieve data from a given ...

shared_ptr< CPSGS_Reply > m_Reply

EPSGS_Status

The GetStatus() method returns a processor current status.

EPSGS_StartProcessing SignalStartProcessing(void)

A processor should call the method when it decides that it successfully started processing the reques...

shared_ptr< CPSGS_Request > m_Request

EDiagSev

Severity level for the posted diagnostics.

@ eDiag_Error

Error message.

@ e500_InternalServerError

string ToJsonString(const CBioseqInfoRecord &bioseq_info, SPSGS_ResolveRequest::TPSGS_BioseqIncludeData include_data_flags, const string &custom_blob_id)

string ToBioseqProtobuf(const CBioseqInfoRecord &bioseq_info)

#define PSG_ERROR(message)

string GetCassStartupDataStateMessage(EPSGS_StartupDataState state)

static const string kResolveProcessorName

EPSGS_ResolutionResult m_ResolutionResult

CBioseqInfoRecord & GetBioseqInfo(void)

bool AdjustName(shared_ptr< CPSGS_Request > request, shared_ptr< CPSGS_Reply > reply)

TPSGS_BioseqIncludeData m_IncludeDataFlags

EPSGS_OutputFormat m_OutputFormat

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