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NCBI C++ ToolKit: src/gui/packages/pkg_sequence_edit/reorder_sequences_dlg.cpp Source File

42 #include <wx/button.h> 43 #include <wx/statbox.h> 121

wxWindowID

id

const

wxString& caption,

const

wxPoint& pos,

const

wxSize&

size

long

style )

125 Create

(parent,

id

, caption, pos,

size

, style);

136

SetExtraStyle(wxWS_EX_BLOCK_EVENTS);

137

wxDialog::Create( parent,

id

, caption, pos,

size

, style );

142

GetSizer()->SetSizeHints(

this

);

147

SetSize(wxSize(280, 750));

185

wxBoxSizer* itemBoxSizer2 =

new

wxBoxSizer(wxVERTICAL);

186

itemDialog1->SetSizer(itemBoxSizer2);

188

wxBoxSizer* itemBoxSizer3 =

new

wxBoxSizer(wxHORIZONTAL);

189

itemBoxSizer2->Add(itemBoxSizer3, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

192

itemBoxSizer3->Add(

m_ListCtrl

, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

194 m_ListCtrl

->InsertColumn(0,

" Sequence"

,wxLIST_FORMAT_LEFT,220);

200 for

(

unsigned int i

=0;

m_SetSeq

.size(); ++

)

209

wxStaticBox* itemStaticBoxSizer4Static =

new

wxStaticBox(itemDialog1,

wxID_ANY

(

"Move selected sequences"

));

210

wxStaticBoxSizer* itemStaticBoxSizer4 =

new

wxStaticBoxSizer(itemStaticBoxSizer4Static, wxHORIZONTAL);

211

itemBoxSizer2->Add(itemStaticBoxSizer4, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

213

wxButton* itemButton1 =

new

wxButton( itemDialog1,

ID_BUTTON_UP

(

"Up"

), wxDefaultPosition, wxDefaultSize, 0 );

214

itemStaticBoxSizer4->Add(itemButton1, 0, wxALIGN_CENTER_VERTICAL|wxALL, 15);

216

wxButton* itemButton2 =

new

wxButton( itemDialog1,

ID_BUTTON_DOWN

(

"Down"

), wxDefaultPosition, wxDefaultSize, 0 );

217

itemStaticBoxSizer4->Add(itemButton2, 0, wxALIGN_CENTER_VERTICAL|wxALL, 15);

219

wxBoxSizer* itemBoxSizer5 =

new

wxBoxSizer(wxHORIZONTAL);

220

itemBoxSizer2->Add(itemBoxSizer5, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

227

itemBoxSizer5->Add(

m_SortButton

, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

230

wxBoxSizer* itemBoxSizer12 =

new

wxBoxSizer(wxHORIZONTAL);

231

itemBoxSizer2->Add(itemBoxSizer12, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

233

wxButton* itemButton13 =

new

wxButton( itemDialog1, wxID_OK,

(

"Accept"

), wxDefaultPosition, wxDefaultSize, 0 );

234

itemBoxSizer12->Add(itemButton13, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

236

wxButton* itemButton14 =

new

wxButton( itemDialog1, wxID_CANCEL,

(

"Cancel"

), wxDefaultPosition, wxDefaultSize, 0 );

237

itemBoxSizer12->Add(itemButton14, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

260

setseq.push_back(pair<CBioseq_set_Handle,CSeq_entry_Handle>(bssh,bsh.

GetSeq_entry_Handle

()));

301

vector < pair<CBioseq_set_Handle,CSeq_entry_Handle> > setseq;

304 for

(

unsigned int i

=0;

<setseq.size(); ++

)

316

vector<int> list_index;

320 cmd

->AddCommand(*set_cmd);

333

item =

m_ListCtrl

->GetNextItem(item, wxLIST_NEXT_ALL, wxLIST_STATE_DONTCARE);

334 if

( item == -1 )

break

;

335 int i

static_cast<int>

(

m_ListCtrl

->GetItemData(item));

336

list_index.push_back(

);

347 for

(

size_t

j = 0; j < list_index.size(); j++)

349 int i

= list_index[j];

350 if

(set_seq[

first

== bssh)

353 if

(set_seq[

].second.HasParentEntry() && set_seq[

].second.GetParentEntry().IsSet() &&

356

se->

Assign

(*set_seq[

].second.GetParentEntry().GetCompleteSeq_entry());

358

se->

Assign

(*set_seq[

].second.GetCompleteSeq_entry());

361

CBioseq_set::TSeq_set::iterator it = old_seq_set.begin();

362 while

(it != old_seq_set.end())

365 if

((*it)->IsSeq() && (*it)->GetSeq().CanGetId())

366 for

(CBioseq::TId::const_iterator

= (*it)->GetSeq().GetId().begin();

!= (*it)->GetSeq().GetId().end(); ++

)

367 if

((*b)->Match(*set_seq[

].second.GetSeq().GetSeqId()))

match

true

;

370

(*it)->GetSet().GetNucFromNucProtSet().CanGetId())

371 for

(CBioseq::TId::const_iterator

= (*it)->GetSet().GetNucFromNucProtSet().GetId().begin();

!= (*it)->GetSet().GetNucFromNucProtSet().GetId().end(); ++

)

372 if

((*b)->Match(*set_seq[

].second.GetSeq().GetSeqId()))

match

true

;

375

it = old_seq_set.erase(it);

382 for

(CBioseq_set::TSeq_set::iterator it = old_seq_set.begin(); it != old_seq_set.end(); ++it)

394

item =

m_ListCtrl

->GetNextItem(item, wxLIST_NEXT_ALL, wxLIST_STATE_SELECTED);

395 if

( item == -1 )

break

;

396 if

( item == 0 )

break

;

397 int i

static_cast<int>

(

m_ListCtrl

->GetItemData(item));

398

wxString name_i =

m_ListCtrl

->GetItemText(item);

399 int

state_i =

m_ListCtrl

->GetItemState(item,wxLIST_STATE_SELECTED);

400 int

j =

static_cast<int>

(

m_ListCtrl

->GetItemData(item-1));

401

wxString name_j =

m_ListCtrl

->GetItemText(item-1);

402 int

state_j =

m_ListCtrl

->GetItemState(item-1,wxLIST_STATE_SELECTED);

405 m_ListCtrl

->SetItemState(item-1,state_i,wxLIST_STATE_SELECTED);

408 m_ListCtrl

->SetItemState(item,state_j,wxLIST_STATE_SELECTED);

420

item =

m_ListCtrl

->GetNextItem(item, wxLIST_NEXT_ALL, wxLIST_STATE_SELECTED);

421 if

( item == -1 )

break

;

422

index.push_back(item);

424 if

( !index.empty() && index.back() !=

m_ListCtrl

->GetItemCount()-1 )

425 for

(vector<long>::reverse_iterator rit = index.rbegin(); rit != index.rend(); ++rit)

428 int i

static_cast<int>

(

m_ListCtrl

->GetItemData(item));

429

wxString name_i =

m_ListCtrl

->GetItemText(item);

430 int

state_i =

m_ListCtrl

->GetItemState(item,wxLIST_STATE_SELECTED);

431 int

j =

static_cast<int>

(

m_ListCtrl

->GetItemData(item+1));

432

wxString name_j =

m_ListCtrl

->GetItemText(item+1);

433 int

state_j =

m_ListCtrl

->GetItemState(item+1,wxLIST_STATE_SELECTED);

436 m_ListCtrl

->SetItemState(item+1,state_i,wxLIST_STATE_SELECTED);

439 m_ListCtrl

->SetItemState(item,state_j,wxLIST_STATE_SELECTED);

447 typedef

vector < pair<CBioseq_set_Handle,CSeq_entry_Handle> > vptr;

448

vptr * setseq = (vptr *)(

data

);

456 return

(

.compare(

));

459 if

(

<j)

return

-1;

487 static bool cmp_labels

(

const

pair<

unsigned int

, pair<bool, string> >&

const

pair<

unsigned int

, pair<bool,string> > &

)

489 bool

numeric1 =

.second.first;

490 bool

numeric2 =

.second.first;

491 string

str1 =

.second.second;

492 string

str2 =

.second.second;

493 if

(numeric1 && numeric2)

497 if

(

!= 0 && j != 0)

500 return

(str1 < str2);

505 string

genebank, general_str, general_int,

local

;

507 for

(CBioseq_Handle::TId::const_iterator it = bsh.

GetId

().begin(); it != bsh.

GetId

().end(); ++it)

509 const CSeq_id

id

= *(it->GetSeqId());

510 if

(

id

.IsGenbank() &&

id

.GetGenbank().IsSetAccession())

511

genebank =

id

.GetGenbank().GetAccession();

512 if

(

id

.IsGeneral() &&

id

.GetGeneral().IsSetTag() &&

id

.GetGeneral().GetTag().IsStr())

513

general_str =

id

.GetGeneral().GetTag().GetStr();

514 if

(

id

.IsGeneral() &&

id

.GetGeneral().IsSetTag() &&

id

.GetGeneral().GetTag().IsId())

516 if

(

id

.IsLocal() &&

id

.GetLocal().IsStr())

517 local

id

.GetLocal().GetStr();

519 if

(!genebank.empty())

524 if

(!general_int.empty())

529 if

(!general_str.empty())

541

vector < pair<CBioseq_set_Handle,CSeq_entry_Handle> > set_seq;

542

vector<pair<unsigned int, pair<bool, string> > > list_seq;

543 ReadBioseq

(*(seh.GetCompleteSeq_entry()),set_seq, seh);

544 for

(

unsigned int i

=0;

<set_seq.size(); ++

)

548

list_seq.push_back(pair<

unsigned int

, pair<bool, string> >(

, pair<bool, string>(numeric,

label

)));

551 for

(

unsigned int i

=0;

<set_seq.size(); ++

)

558

vector<int> list_index;

559 for

(

size_t

j = 0; j < list_seq.size(); j++)

561

list_index.push_back(list_seq[j].

first

);

573 cmd

->AddCommand(*set_cmd);

const CSeq_id * GetFirstId() const

objects::CSeq_entry_Handle m_TopSeqEntry

void PrepareList(vector< int > &list_index)

static bool ShowToolTips()

Should we show tooltips?

static string GetIdLabel(CBioseq_Handle bsh, bool &numeric)

static void ReadBioseq(const CSeq_entry &se, vector< pair< CBioseq_set_Handle, CSeq_entry_Handle > > &setseq, CSeq_entry_Handle seh)

~CReorderSequencesDlg()

Destructor.

vector< pair< CBioseq_set_Handle, CSeq_entry_Handle > > m_SetSeq

void OnButtonDown(wxCommandEvent &event)

void OnButtonSort(wxCommandEvent &event)

void CreateControls()

Creates the controls and sizers.

static CRef< CCmdComposite > ReorderById(objects::CSeq_entry_Handle seh)

void OnButtonUp(wxCommandEvent &event)

wxIcon GetIconResource(const wxString &name)

Retrieves icon resources.

static void PopulateSet(CBioseq_set_Handle bssh, CBioseq_set &new_set, const vector< int > &list_index, const vector< pair< CBioseq_set_Handle, CSeq_entry_Handle > > &set_seq)

void Init()

Initialises member variables.

bool Create(wxWindow *parent, wxWindowID id=11100, const wxString &caption=_("Reorder Sequences Dialog"), const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxDefaultSize, long style=wxCAPTION|wxRESIZE_BORDER|wxSYSTEM_MENU|wxCLOSE_BOX|wxTAB_TRAVERSAL)

Creation.

CRef< CCmdComposite > GetCommand()

wxBitmap GetBitmapResource(const wxString &name)

Retrieves bitmap resources.

CReorderSequencesDlg()

Constructors.

iterator_bool insert(const value_type &val)

const_iterator begin() const

parent_type::iterator iterator

const_iterator end() const

static DLIST_TYPE *DLIST_NAME() first(DLIST_LIST_TYPE *list)

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Set object to copy of another one.

@ eContent

Untagged human-readable accession or the like.

CBioseq_set_Handle GetParentBioseq_set(void) const

Return a handle for the parent Bioseq-set, or null handle.

bool CanGetClass(void) const

CSeq_entry_Handle GetSeq_entry_Handle(void) const

Get parent Seq-entry handle.

CConstRef< CBioseq_set > GetCompleteBioseq_set(void) const

Return the complete bioseq-set object.

CBioseq_set_Handle GetParentBioseq_set(void) const

Return a handle for the parent Bioseq-set, or null handle.

CBioseq_Handle GetBioseqHandle(const CSeq_id &id) const

Get Bioseq handle from the TSE of this Seq-entry.

CSeq_entry_Handle GetParentEntry(void) const

Return a handle for the parent seq-entry of the bioseq.

const TId & GetId(void) const

CConstRef< CBioseq_set > GetBioseq_setCore(void) const

Return core data for the bioseq-set.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static string IntToString(int value, TNumToStringFlags flags=0, int base=10)

Convert int to string.

static unsigned int StringToUInt(const CTempString str, TStringToNumFlags flags=0, int base=10)

Convert string to unsigned int.

@ fConvErr_NoThrow

Do not throw an exception on error.

@ fAllowLeadingSymbols

Ignore leading non-numeric characters.

@ fAllowTrailingSymbols

Ignore trailing non-numerics characters.

static const char label[]

const TSeq & GetSeq(void) const

Get the variant data.

bool CanGetSeq_set(void) const

Check if it is safe to call GetSeq_set method.

TClass GetClass(void) const

Get the Class member data.

const TSet & GetSet(void) const

Get the variant data.

bool IsSeq(void) const

Check if variant Seq is selected.

void ResetSeq_set(void)

Reset Seq_set data member.

bool CanGetClass(void) const

Check if it is safe to call GetClass method.

bool IsSet(void) const

Check if variant Set is selected.

const TSeq_set & GetSeq_set(void) const

Get the Seq_set member data.

list< CRef< CSeq_entry > > TSeq_set

TSeq_set & SetSeq_set(void)

Assign a value to Seq_set data member.

@ eClass_nuc_prot

nuc acid and coded proteins

constexpr auto sort(_Init &&init)

const struct ncbi::grid::netcache::search::fields::SIZE size

static int match(PCRE2_SPTR start_eptr, PCRE2_SPTR start_ecode, uint16_t top_bracket, PCRE2_SIZE frame_size, pcre2_match_data *match_data, match_block *mb)

static const char * down_xpm[]

int wxCALLBACK ReverseCompareFunction(wxIntPtr item1, wxIntPtr item2, wxIntPtr data)

int wxCALLBACK DirectCompareFunction(wxIntPtr item1, wxIntPtr item2, wxIntPtr data)

static const char * up_xpm[]

static bool cmp_labels(const pair< unsigned int, pair< bool, string > > &a, const pair< unsigned int, pair< bool, string > > &b)

#define ID_LISTCTRL_REORDER

#define FOR_EACH_SEQENTRY_ON_SEQSET(Itr, Var)

FOR_EACH_SEQENTRY_ON_SEQSET EDIT_EACH_SEQENTRY_ON_SEQSET.

wxString ToWxString(const string &s)

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Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/reorder__sequences__dlg_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/packages/pkg_sequence_edit/reorder_sequences_dlg.cpp Source File

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