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NCBI C++ ToolKit: include/gui/packages/pkg_sequence_edit/remove_xrefs.hpp Source File

<

T>

(objects::CBioSource& biosource) {T::ModifyBioSource(biosource);}

<

T>

(objects::CFeat_CI feat_ci(seh, objects::SAnnotSelector(

)); feat_ci; ++feat_ci)

objects::CSeq_feat&

= feat_ci->GetOriginalFeature();

new_feat->Assign(

);

(new_feat->IsSetDbxref())

ModifyFeature(new_feat);

<

T>

(biosource.IsSetOrg() && biosource.GetOrg().IsSetDb())

ModifyBioSource(biosource);

<

T>

((*it)->IsSource()) {

objects::CSeqdesc& orig_desc = **it;

new_desc->Assign(orig_desc);

(ChangeBioSource(new_desc->SetSource())) {

GetDesc(**it, scope, composite);

<

T>

GetDesc(*(tse.GetCompleteSeq_entry()), tse.GetScope(), composite);

(objects::CFeat_CI feat_it(tse, objects::SAnnotSelector(objects::CSeqFeatData::e_Biosrc)); feat_it; ++feat_it) {

new_feat->Assign(feat_it->GetOriginalFeature());

(ChangeBioSource(new_feat->SetData().SetBiosrc())) {

void AddCommand(IEditCommand &command)

static void rm_dbxref_from_biosource_and_feats(objects::CSeq_entry_Handle seh, ICommandProccessor *cmd_processor)

static void rm_dbxref_from_biosource(objects::CSeq_entry_Handle seh, ICommandProccessor *cmd_processor)

static void ModifyBioSource(objects::CBioSource &biosource)

static void ModifyFeature(CRef< objects::CSeq_feat > feat)

static void rm_dbxref_from_feat(objects::CSeq_entry_Handle seh, objects::CSeqFeatData::E_Choice type, ICommandProccessor *cmd_processor)

static void ModifyBioSource(objects::CBioSource &biosource)

static void rm_taxon_from_feats_and_biosource(objects::CSeq_entry_Handle seh, ICommandProccessor *cmd_processor)

static void rm_taxon_from_feats(objects::CSeq_entry_Handle seh, ICommandProccessor *cmd_processor)

static void ModifyFeature(CRef< objects::CSeq_feat > feat)

static void GetDesc(const objects::CSeq_entry &se, objects::CScope &scope, CRef< CCmdComposite > composite)

static void FindFeatures(objects::CSeq_entry_Handle seh, objects::CSeqFeatData::E_Choice type, CRef< CCmdComposite > cmd)

static void FindBioSource(objects::CSeq_entry_Handle tse, CRef< CCmdComposite > composite)

static bool ChangeBioSource(objects::CBioSource &biosource)

static void ModifyBioSource(objects::CBioSource &biosource)

static void ModifyFeature(CRef< objects::CSeq_feat > feat)

Undo/Redo interface for editing operations.

Include a standard set of the NCBI C++ Toolkit most basic headers.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

where boath are integers</td > n< td ></td > n</tr > n< tr > n< td > tse</td > n< td > optional</td > n< td > String</td > n< td class=\"description\"> TSE option controls what blob is orig

#define FOR_EACH_SEQENTRY_ON_SEQSET(Itr, Var)

FOR_EACH_SEQENTRY_ON_SEQSET EDIT_EACH_SEQENTRY_ON_SEQSET.

#define FOR_EACH_SEQDESC_ON_SEQENTRY(Itr, Var)

FOR_EACH_SEQDESC_ON_SEQENTRY EDIT_EACH_SEQDESC_ON_SEQENTRY.

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