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NCBI C++ ToolKit: include/connect/services/remote_app.hpp Source File

&

,

& data_size) :

m_Storage(storage), m_Data(&

), m_DataSize(&data_size)

x_GetTypeAndName(

& istream,

& name);

(

& cmdline) { m_CmdLine = cmdline; }

m_StdIn.GetOStream(

,

, m_MaxInlineSize);

m_StdIn.GetIStream();

& stderr_fname,

m_StdOutFileName = stdout_fname;

m_StdErrFileName = stderr_fname;

m_StorageType =

;

{

m_StorageType; }

m_NetCacheAPI(netcache_api),

m_StdOut(netcache_api, m_OutBlobIdOrData, m_OutBlobSize),

m_StdErr(netcache_api, m_ErrBlobIdOrData, m_ErrBlobSize),

m_MaxInlineSize(max_inline_size)

m_StdOut.GetOStream(m_StdOutFileName,

m_StorageType, m_MaxInlineSize);

m_StdOut.GetIStream(&m_StdOutFileName, &m_StorageType);

m_StdErr.GetOStream(m_StdErrFileName,

m_StorageType, m_MaxInlineSize);

m_StdErr.GetIStream(&m_StdErrFileName, &m_StorageType);

& stderr_fname,

m_StdOutFileName = stdout_fname;

m_StdErrFileName = stderr_fname;

m_StorageType =

;

{

m_StorageType; }

{ m_MaxInlineSize = max_inline_size; }

CBlobStreamHelper(CNetCacheAPI::TInstance storage, string &data, size_t &data_size)

Client API for NetCache server.

Remote Application Request (both client side and application executor side)

CNetCacheAPI m_NetCacheAPI

CNcbiIstream & GetStdInForRead()

Get the stdin stream of the remote application.

EStdOutErrStorageType m_StorageType

const TFiles & GetFileNames() const

CNetCacheAPI & GetNetCacheAPI()

bool IsExclusiveMode() const

const string & GetWorkingDir() const

void SetExclusiveMode(bool on_off)

void SetMaxInlineSize(size_t max_inline_size)

void SetStdOutErrFileNames(const string &stdout_fname, const string &stderr_fname, EStdOutErrStorageType type)

void AddFileForTransfer(const string &fname, EStdOutErrStorageType tt=eBlobStorage)

Transfer a file to an application executor side.

const string & GetStdOutFileName() const

CBlobStreamHelper m_StdIn

const string & GetInBlobIdOrData() const

map< string, EStdOutErrStorageType > TFiles

static CAtomicCounter sm_DirCounter

void Deserialize(CNcbiIstream &is)

void SetAppRunTimeout(unsigned int sec)

EStdOutErrStorageType GetStdOutErrStorageType() const

const string & GetCmdLine() const

Get the command line of the remote application.

CNcbiOstream & GetStdIn()

Get an output stream to write data to a remote application stdin.

const string & GetStdErrFileName() const

unsigned int GetAppRunTimeout() const

unsigned int m_AppRunTimeout

map< string, string > TStoredFiles

void SetCmdLine(const string &cmdline)

Set the command line for the remote application.

Remote Application Result (both client side and application executor side)

CBlobStreamHelper m_StdErr

void SetRetCode(int ret_code)

CNcbiOstream & GetStdOutForWrite()

Get a stream to put remote application's stdout to.

const string & GetErrBlobIdOrData() const

CNcbiIstream & GetStdErr()

Get a remote application stderr.

CNetCacheAPI m_NetCacheAPI

const string & GetStdOutFileName() const

EStdOutErrStorageType GetStdOutErrStorageType() const

CNcbiIstream & GetStdOut()

Get a remote application stdout.

void SetStdOutErrFileNames(const string &stdout_fname, const string &stderr_fname, EStdOutErrStorageType type)

CRemoteAppResult(CNetCacheAPI::TInstance netcache_api, size_t max_inline_size=kMaxBlobInlineSize)

const string & GetStdErrFileName() const

const string & GetOutBlobIdOrData() const

void SetMaxInlineSize(size_t max_inline_size)

EStdOutErrStorageType m_StorageType

CNcbiOstream & GetStdErrForWrite()

CBlobStreamHelper m_StdOut

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

IO_PREFIX::ostream CNcbiOstream

Portable alias for ostream.

IO_PREFIX::istream CNcbiIstream

Portable alias for istream.

#define NCBI_XCONNECT_EXPORT

Miscellaneous common-use basic types and functionality.

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.

NCBI C++ stream class wrappers for triggering between "new" and "old" C++ stream libraries.

const size_t kMaxBlobInlineSize

string JoinCmdLine(const vector< string > &args)

void TokenizeCmdLine(const string &cmdline, vector< string > &args)

void Serialize(CNcbiOstream &, const CRawScoreVector< Key, Score > &)

Generics These throw an exception; we must implement serialization for each type.

unique_ptr< CObjectIStream > GetIStream(string path, ESerialDataFormat serial_format)

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