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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/reference__item_8hpp_source.html below:

NCBI C++ ToolKit: include/objtools/format/items/reference_item.hpp Source File

1 #ifndef OBJTOOLS_FORMAT_ITEMS___REFERENCE_ITEM__HPP 2 #define OBJTOOLS_FORMAT_ITEMS___REFERENCE_ITEM__HPP 77 bool IsProt

(

void

)

const

{

return

m_IsProt; }

133

TReftype GetReftype (

void

)

const

;

138 bool IsSetDate

(

void

)

const

{

return

m_Date.NotEmpty(); }

144 bool IsSetBook

(

void

)

const

{

return

m_Book.NotEmpty(); }

151 bool IsSetGen

(

void

)

const

{

return

m_Gen.NotEmpty(); }

154 bool IsSetSub

(

void

)

const

{

return

m_Sub.NotEmpty(); }

162 const string

GetDOI

(

void

)

const

{

return

m_DOI; }

163 const string

GetPII

(

void

)

const

{

return

m_ELocationPII; }

164 const string

GetOldPII

(

void

)

const

{

return

m_OldPII; }

166 const string

GetTitle

(

void

)

const

{

return

m_Title; }

168 const string

& GetUniqueStr (

void

)

const

;

173 const string

GetRemark

(

void

)

const

{

return

m_Remark; }

181 bool

Matches(

const CPub_set

& ps)

const

;

182 bool

Matches(

const CPub

& pub)

const

;

187 static void

GetAuthNames(

const CAuth_list

alp

, TStrList& authors);

189 static void

FormatAuthors(

const CAuth_list

alp

string

& auth);

191 static void

FormatAffil(

const CAffil

& affil,

string

result

bool

gen_sub =

false

);

193 static void

ChangeMedlineAuthorsToISO(

CRef<CPub>

pub);

220 void

x_CreateUniqueStr(

void

)

const

;

221 void

x_CleanData(

void

);

222 void

x_CapitalizeTitleIfNecessary(

void

);

@Affil.hpp User-defined methods of the data storage class.

@Auth_list.hpp User-defined methods of the data storage class.

vector< string > * TCache

const TCache & GetCache(void) const

int GetLength(void) const

virtual void Format(IFormatter &formatter, IFlatTextOStream &text_os) const =0

virtual void x_GatherInfo(CBioseqContext &)

@Pubdesc.hpp User-defined methods of the data storage class.

bool IsSetSub(void) const

CConstRef< CSeq_loc > m_Loc

TPubType GetPubType(void) const

TSeqid GetPatSeqid(void) const

CConstRef< CPubdesc > m_Pubdesc

TEntrezId GetMUID(void) const

CConstRef< CDate > m_Date

CReferenceItem(const CReferenceItem &value)

const string & GetTitle(void) const

bool IsSetJournal(void) const

void x_CreateUniqueStr(void) const

bool IsSetBook(void) const

const CCit_gen & GetGen(void) const

const CCit_pat & GetPatent(void) const

CConstRef< CCit_gen > m_Gen

CConstRef< CCit_sub > m_Sub

const string & GetPII(void) const

const string & GetRemark(void) const

const CCit_sub & GetSub(void) const

const string & GetUniqueStr(void) const

const string & GetOldPII(void) const

CConstRef< CCit_book > m_Book

int GetSerial(void) const

TEntrezId GetPMID(void) const

const CCit_book & GetBook(void) const

vector< CRef< CReferenceItem > > TReferences

TCategory GetCategory(void) const

CReferenceItem & operator=(const CReferenceItem &value)

TReftype GetReftype(void) const

const CAuth_list & GetAuthors(void) const

bool IsSetGen(void) const

const CCit_jour & GetJournal(void) const

const CPubdesc & GetPubdesc(void) const

CConstRef< CCit_pat > m_Patent

CConstRef< CCit_jour > m_Journal

CConstRef< CAuth_list > m_Authors

bool IsSetPatent(void) const

bool IsJustUids(void) const

bool IsSetDate(void) const

const CSeq_loc & GetLoc(void) const

CPubdesc::TReftype TReftype

const CDate & GetDate(void) const

const string & GetDOI(void) const

const string & GetConsortium(void) const

bool IsElectronic(void) const

bool IsSetAuthors(void) const

namespace ncbi::objects::

virtual EItem GetItemType(void) const =0

Include a standard set of the NCBI C++ Toolkit most basic headers.

SStrictId_Entrez::TId TEntrezId

TEntrezId type for entrez ids which require the same strictness as TGi.

bool NotEmpty(void) const THROWS_NONE

Check if CConstRef is not empty â pointing to an object and has a non-null value.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

#define NCBI_FORMAT_EXPORT

TReftype GetReftype(void) const

Get the Reftype member data.

@ eReftype_seq

refers to sequence

const GenericPointer< typename T::ValueType > T2 value

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