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NCBI C++ ToolKit: src/objtools/flatfile/ref.h File Reference

enum ERefRetType {
  ParFlat_MISSING_JOURNAL = 0 , ParFlat_UNPUB_JOURNAL = 1 , ParFlat_MONOGRAPH_NOT_JOURNAL = 2 , ParFlat_NORMAL_JOURNAL = 3 ,
  ParFlat_SYMPOSIUM_CITATION = 4 , ParFlat_SUBMITTED = 5 , ParFlat_THESIS_CITATION = 6 , ParFlat_THESIS_IN_PRESS = 7 ,
  ParFlat_IN_PRESS = 8 , ParFlat_PATENT_CITATION = 9 , ParFlat_BOOK_CITATION = 10 , ParFlat_GEN_CITATION = 11 ,
  ParFlat_ONLINE_CITATION = 12
} enum ERefBlockType {
  ParFlat_ReftypeIgnore = 0 , ParFlat_ReftypeNoParse = 1 , ParFlat_ReftypeThesis = 2 , ParFlat_ReftypeArticle = 3 ,
  ParFlat_ReftypeSubmit = 4 , ParFlat_ReftypeBook = 5 , ParFlat_ReftypePatent = 6 , ParFlat_ReftypeUnpub = 7
} CRef< objects::CPub > journal (ParserPtr pp, char *bptr, char *eptr, CRef< objects::CAuth_list > &auth_list, CRef< objects::CTitle::C_E > &title, bool has_muid, CRef< objects::CCit_art > &cit_art, Int4 er) Int4 fta_remark_is_er (const string &str) CRef< objects::CPubdesc > sp_refs (ParserPtr pp, const DataBlk &dbp, Uint2 col_data) CRef< objects::CPubdesc > DescrRefs (ParserPtr pp, DataBlk &dbp, Uint2 col_data) ◆ ERefBlockType Enumerator ParFlat_ReftypeIgnore ParFlat_ReftypeNoParse ParFlat_ReftypeThesis ParFlat_ReftypeArticle ParFlat_ReftypeSubmit ParFlat_ReftypeBook ParFlat_ReftypePatent ParFlat_ReftypeUnpub

Definition at line 53 of file ref.h.

◆ ERefRetType Enumerator ParFlat_MISSING_JOURNAL ParFlat_UNPUB_JOURNAL ParFlat_MONOGRAPH_NOT_JOURNAL ParFlat_NORMAL_JOURNAL ParFlat_SYMPOSIUM_CITATION ParFlat_SUBMITTED ParFlat_THESIS_CITATION ParFlat_THESIS_IN_PRESS ParFlat_IN_PRESS ParFlat_PATENT_CITATION ParFlat_BOOK_CITATION ParFlat_GEN_CITATION ParFlat_ONLINE_CITATION

Definition at line 37 of file ref.h.

◆ DescrRefs()

Definition at line 2421 of file ref.cpp.

References Parser::curindx, Parser::EMBL, embl_refs(), Parser::entrylist, ERR_REFERENCE_InvalidMuid, ERR_REFERENCE_MissingAuthors, Parser::format, fta_check_long_names(), fta_propagate_pmid_muid(), fta_sort_pubs(), FtaErrPost, gb_refs_common(), Parser::GenBank, Parser::HTGS, Parser::mode, CRef< C, Locker >::NotEmpty(), SEV_ERROR, SEV_REJECT, ShrinkSpaces(), Parser::source, sp_refs(), Parser::SPROT, Parser::XML, and XMLRefs().

Referenced by GetEmblDescr(), GetGenBankDescr(), GetSprotDescr(), ImpFeatPub(), SeqFeatPub(), and XMLGetDescr().

◆ fta_remark_is_er() ◆ journal() CRef<objects::CPub> journal ( ParserPtr pp, char * bptr, char * eptr, CRef< objects::CAuth_list > & auth_list, CRef< objects::CTitle::C_E > & title, bool has_muid, CRef< objects::CCit_art > & cit_art, Int4 er ) ◆ sp_refs()

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