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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/reader__snp_8cpp.html below:

NCBI C++ ToolKit: src/objtools/data_loaders/genbank/reader_snp.cpp File Reference

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  NCBI_PARAM_DECL (bool, GENBANK, SNP_TABLE_STAT)     NCBI_PARAM_DEF_EX (bool, GENBANK, SNP_TABLE_STAT, false, eParam_NoThread, GENBANK_SNP_TABLE_STAT)   static bool  CollectSNPStat (void)   static void  write_unsigned (CNcbiOstream &stream, size_t n, const char *name)   static unsigned  read_unsigned (CNcbiIstream &stream, const char *name)   static void  write_gi (CNcbiOstream &stream, TGi gi, const char *name)   static TGi  read_gi (CNcbiIstream &stream, const char *name)   static void  write_size (CNcbiOstream &stream, size_t size)   static size_t  read_size (CNcbiIstream &stream, const char *name)   static void  write_string (CNcbiOstream &stream, const string &str)   static void  read_string (CNcbiIstream &stream, string &str, size_t max_length)   static void  write_seq_id (CNcbiOstream &stream, const CSeq_id &id)   static CRef< CSeq_id >  read_seq_id (CNcbiIstream &stream)   void  StoreIndexedStringsTo (CNcbiOstream &stream, const CIndexedStrings &strings)   void  LoadIndexedStringsFrom (CNcbiIstream &stream, CIndexedStrings &strings, size_t max_index, size_t max_length)   void  StoreIndexedOctetStringsTo (CNcbiOstream &stream, const CIndexedOctetStrings &strings)   void  LoadIndexedOctetStringsFrom (CNcbiIstream &stream, CIndexedOctetStrings &strings, size_t max_index, size_t max_length)   ◆ CollectSNPStat() ◆ LoadIndexedOctetStringsFrom() ◆ LoadIndexedStringsFrom() ◆ NCBI_PARAM_DECL() NCBI_PARAM_DECL ( bool  , GENBANK  , SNP_TABLE_STAT    ) ◆ NCBI_PARAM_DEF_EX() ◆ read_gi() ◆ read_seq_id() ◆ read_size()

Definition at line 404 of file reader_snp.cpp.

References NCBI_THROW, and ncbi::grid::netcache::search::fields::size.

Referenced by CSampleNetCacheClient::DemoIWriterIReader(), SBamAlignInfo::get_cigar_alignment(), CTL_CursorResultExpl::GetItem(), CNSStartIDs::Load(), LoadIndexedOctetStringsFrom(), LoadIndexedStringsFrom(), neighbor_query(), read_string(), CFormatGuess::TestFormatNewick(), and CSeq_annot_SNP_Info_Reader::x_Read().

◆ read_string() ◆ read_unsigned() ◆ StoreIndexedOctetStringsTo() ◆ StoreIndexedStringsTo() ◆ write_gi() ◆ write_seq_id() ◆ write_size() ◆ write_string() ◆ write_unsigned() ◆ kMax_AlleleLength const size_t kMax_AlleleLength = 256 static ◆ kMax_CommentLength const size_t kMax_CommentLength = 65536 static ◆ kMax_ExtraLength const size_t kMax_ExtraLength = 256 static ◆ kMax_QualityLength const size_t kMax_QualityLength = 32 static ◆ kMax_StringLength const size_t kMax_StringLength = 256 static ◆ MAGIC const unsigned MAGIC = 0x12340008 static

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