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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/reader__id2_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/data_loaders/genbank/id2/reader_id2.cpp Source File

* ptr = fail_counter.

();

fail_counter = 0;

stream.setstate(ios::badbit);

& driver_name)

( service_name.empty() ) {

( service_name.empty() ) {

service_name =

(GENBANK,ID2_SERVICE_NAME)::GetDefault();

( service_name.empty() ) {

s <<

;

s <<

;

( stream.bad() ) {

+

( stream.bad() ) {

+

tmout.

= 0; tmout.

= 1;

packet.

().push_back(

(&req));

s <<

;

+

s <<

;

+

s <<

;

+

+

+

+

+

+

objects::CReader* drv = 0;

drv =

objects::CId2Reader(params, driver);

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

Base class, inherited from "std::iostream", does both input and output, using the specified CONNECTOR...

virtual void x_ReceiveReply(TConn conn, CID2_Reply &reply)=0

void x_SetContextData(CID2_Request &request)

static int GetDebugLevel(void)

Class factory for ID2 reader.

objects::CReader * CreateInstance(const string &driver=kEmptyStr, CVersionInfo version=NCBI_INTERFACE_VERSION(objects::CReader), const TPluginManagerParamTree *params=0) const

Create instance of TDriver.

CSimpleClassFactoryImpl< objects::CReader, objects::CId2Reader > TParent

virtual void x_DisconnectAtSlot(TConn conn, bool failed)

CConn_IOStream * x_GetCurrentConnection(TConn conn) const

virtual void x_AddConnectionSlot(TConn conn)

virtual void x_RemoveConnectionSlot(TConn conn)

virtual void x_SendPacket(TConn conn, const CID2_Request_Packet &packet)

void x_InitConnection(CConn_IOStream &stream, TConn conn)

CReaderServiceConnector m_Connector

CId2Reader(int max_connections=0)

int GetMaximumConnectionsLimit(void) const

TConnections m_Connections

virtual void x_ReceiveReply(TConn conn, CID2_Reply &reply)

virtual void x_ConnectAtSlot(TConn conn)

virtual string x_ConnDescription(TConn conn) const

CConn_IOStream * x_GetConnection(TConn conn)

Data loader exceptions, used by GenBank loader.

CObjectIStreamAsnBinary –.

void RememberIfBad(SConnInfo &conn_info)

void SetTimeoutTo(STimeout *tmout) const

void InitTimeouts(CConfig &conf, const string &driver_name)

SConnInfo Connect(int error_count=0)

string GetConnDescription(CConn_IOStream &stream) const

const string & GetServiceName(void) const

void SetServiceName(const string &service_name)

void x_ReportDisconnect(const char *reader, const char *server, TConn conn, bool failed) const

virtual void OpenConnection(TConn conn)

void InitParams(CConfig &conf, const string &driver_name, int default_max_conn)

int SetMaximumConnections(int max)

Template class helps to implement one driver class factory.

definition of a Culling tree

container_type::const_iterator const_iterator

const_iterator end() const

const_iterator find(const key_type &key) const

static CS_CONNECTION * conn

void reset(element_type *p=0, EOwnership ownership=eTakeOwnership)

Reset will delete the old pointer (if owned), set content to the new value, and assume the ownership ...

element_type * get(void) const

Get pointer.

EIO_Status CONN_SetTimeout(CONN conn, EIO_Event event, const STimeout *timeout)

Specify timeout for the connection I/O, including "Connect" (aka "Open") and "Close".

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

#define NCBI_RETHROW(prev_exception, exception_class, err_code, message)

Generic macro to re-throw an exception.

#define MSerial_AsnText

I/O stream manipulators –.

string GetString(const string &driver_name, const string &param_name, EErrAction on_error, const string &default_value, const list< string > *synonyms=NULL)

Utility function to get an element of parameter tree Throws an exception when mandatory parameter is ...

@ eErr_NoThrow

Return default value on error.

CRef< C > Ref(C *object)

Helper functions to get CRef<> and CConstRef<> objects.

#define NCBI_PARAM_TYPE(section, name)

Generate typename for a parameter from its {section, name} attributes.

@ eParam_NoThread

Do not use per-thread values.

static void NCBI_EntryPointImpl(TDriverInfoList &info_list, EEntryPointRequest method)

Entry point implementation.

#define NCBI_INTERFACE_VERSION(iface)

Macro to construct CVersionInfo class using interface name (relies on CInterfaceVersion class)

list< SDriverInfo > TDriverInfoList

List of driver information.

EEntryPointRequest

Actions performed by the entry point.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

IO_PREFIX::iostream CNcbiIostream

Portable alias for iostream.

void SetValue(TValue *value, FCleanup cleanup=0, void *cleanup_data=0, CTlsBase::ENativeThreadCleanup native=CTlsBase::eSkipCleanup)

unsigned int usec

microseconds (modulo 1,000,000)

@ eIO_ReadWrite

eIO_Read | eIO_Write (also, eCONN_OnFlush)

@ eIO_Close

also serves as an error indicator in SOCK_Poll

@ eNonCompatible

major, minor does not match

E_Choice Which(void) const

Which variant is currently selected.

bool IsSetDiscard(void) const

Check if a value has been assigned to Discard data member.

const TReply & GetReply(void) const

Get the Reply member data.

Tdata & Set(void)

Assign a value to data member.

bool IsSetError(void) const

Check if a value has been assigned to Error data member.

void SetRequest(TRequest &value)

Assign a value to Request data member.

bool IsSetEnd_of_reply(void) const

true if this reply is the last one for the request false if more replies will follow Check if a value...

unsigned int

A callback function used to compare two keys in a database.

const string version

version string

const GenericPointer< typename T::ValueType > T2 value

Parameters initialization model.

Multi-threading – mutexes; rw-locks; semaphore.

std::istream & in(std::istream &in_, double &x_)

Helper classes and templates to implement plugins.

#define GENBANK_ID2_RANDOM_FAILS_RECOVER

NCBI_PARAM_DECL(string, GENBANK, ID2_CGI_NAME)

#define GENBANK_ID2_RANDOM_FAILS_FREQUENCY

NCBI_PARAM_DEF_EX(string, GENBANK, ID2_CGI_NAME, "", eParam_NoThread, GENBANK_ID2_CGI_NAME)

#define SetRandomFail(stream, conn)

void NCBI_EntryPoint_Id2Reader(CPluginManager< objects::CReader >::TDriverInfoList &info_list, CPluginManager< objects::CReader >::EEntryPointRequest method)

void GenBankReaders_Register_Id2(void)

void NCBI_EntryPoint_xreader_id2(CPluginManager< objects::CReader >::TDriverInfoList &info_list, CPluginManager< objects::CReader >::EEntryPointRequest method)

#define NCBI_GBLOADER_READER_ID2_PARAM_SERVICE_NAME

#define NCBI_GBLOADER_READER_ID2_DRIVER_NAME

AutoPtr< CConn_IOStream > m_Stream

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