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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/reader__gicache_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/data_loaders/genbank/gicache/reader_gicache.cpp Source File

SetMaximumConnections(1);

& driver_name)

s_LogFunc(

severity,

*

)

(

);

(

(index).IsDir() ) {

( seq_id.

() ) {

<<

<<

);

objects::CReader* drv = 0;

drv =

objects::CGICacheReader(params, driver);

Class factory for ID1 reader.

objects::CReader * CreateInstance(const string &driver=kEmptyStr, CVersionInfo version=NCBI_INTERFACE_VERSION(objects::CReader), const TPluginManagerParamTree *params=0) const

Create instance of TDriver.

CSimpleClassFactoryImpl< objects::CReader, objects::CGICacheReader > TParent

bool MayBeSkippedOnErrors(void) const

int GetRetryCount(void) const

virtual void x_DisconnectAtSlot(TConn conn, bool failed)

int GetMaximumConnectionsLimit(void) const

virtual bool LoadStringSeq_ids(CReaderRequestResult &result, const string &seq_id)

virtual bool LoadSeq_idSeq_ids(CReaderRequestResult &result, const CSeq_id_Handle &seq_id)

virtual void x_AddConnectionSlot(TConn conn)

virtual bool LoadBlobVersion(CReaderRequestResult &result, const TBlobId &blob_id)

virtual void x_RemoveConnectionSlot(TConn conn)

virtual void x_ConnectAtSlot(TConn conn)

virtual bool LoadSeq_idAccVer(CReaderRequestResult &result, const CSeq_id_Handle &seq_id)

virtual bool LoadBlob(CReaderRequestResult &result, const CBlob_id &blob_id)

virtual bool LoadBlobState(CReaderRequestResult &result, const TBlobId &blob_id)

bool SetLoadedAccVer(const TData &data)

Template class helps to implement one driver class factory.

definition of a Culling tree

int GICache_ReadData(const char *prefix)

void GICache_SetLogEx(void(*logfunc)(int severity, char *msg))

int GICache_GetAccession(int64_t gi, char *acc, int buf_len)

#define DEFAULT_GI_CACHE_PREFIX

constexpr size_t ArraySize(const Element(&)[Size])

#define ERR_POST_ONCE(message)

Error posting only once during program execution.

#define ERR_POST(message)

Error posting with file, line number information but without error codes.

EDiagSev

Severity level for the posted diagnostics.

@ eDiag_Info

Informational message.

@ eDiag_Error

Error message.

@ eDiag_Warning

Warning message.

@ eDiag_Fatal

Fatal error – guarantees exit(or abort)

@ eDiag_Critical

Critical error message.

static string MakePath(const string &dir=kEmptyStr, const string &base=kEmptyStr, const string &ext=kEmptyStr)

Assemble a path from basic components.

string GetString(const string &driver_name, const string &param_name, EErrAction on_error, const string &default_value, const list< string > *synonyms=NULL)

Utility function to get an element of parameter tree Throws an exception when mandatory parameter is ...

@ eErr_NoThrow

Return default value on error.

static CSeq_id_Handle GetHandle(const CSeq_id &id)

Normal way of getting a handle, works for any seq-id.

static void NCBI_EntryPointImpl(TDriverInfoList &info_list, EEntryPointRequest method)

Entry point implementation.

#define NCBI_INTERFACE_VERSION(iface)

Macro to construct CVersionInfo class using interface name (relies on CInterfaceVersion class)

list< SDriverInfo > TDriverInfoList

List of driver information.

EEntryPointRequest

Actions performed by the entry point.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

@ eNonCompatible

major, minor does not match

const string version

version string

Helper classes and templates to implement plugins.

void GenBankReaders_Register_GICache(void)

#define DEFAULT_GI_CACHE_PATH

void NCBI_EntryPoint_GICacheReader(CPluginManager< objects::CReader >::TDriverInfoList &info_list, CPluginManager< objects::CReader >::EEntryPointRequest method)

void NCBI_EntryPoint_xreader_gicache(CPluginManager< objects::CReader >::TDriverInfoList &info_list, CPluginManager< objects::CReader >::EEntryPointRequest method)

#define NCBI_GBLOADER_READER_GICACHE_PARAM_PATH_NAME

#define NCBI_GBLOADER_READER_GICACHE_DRIVER_NAME

static SLJIT_INLINE sljit_ins msg(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

Better replacement of GetAccVer(), this method should be defined in data loaders, GetAccVer() is left...

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