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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/reader_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/data_loaders/genbank/reader.cpp Source File

46 #define NCBI_USE_ERRCODE_X Objtools_Reader 57 # define TRACE_SET(m) \ 58  LOG_POST(Info<<SetPostFlags(eDPF_DateTime|eDPF_TID)<<m) 63

*

this

<< name <<

'('

<<

conn

<<

"): "

;

69

*

this

<< name <<

": "

;

80 #define DEFAULT_PREOPEN false 81 #define DEFAULT_RETRY_COUNT 5 82 #define DEFAULT_WAIT_TIME_ERRORS 2 83 #define DEFAULT_WAIT_TIME 1 84 #define DEFAULT_WAIT_TIME_MULTIPLIER 1.5 85 #define DEFAULT_WAIT_TIME_INCREMENT 1 86 #define DEFAULT_WAIT_TIME_MAX 30 132  const string

& driver_name,

133  int

default_max_conn)

136

conf.

GetInt

(driver_name,

141  bool

open_initial_connection =

148

conf.

GetInt

(driver_name,

154  int

max_connections = conf.

GetInt

(driver_name,

158  if

( max_connections == -1 ) {

159

max_connections = conf.

GetInt

(driver_name,

171  for

(

int

attempt = 1; ; ++attempt ) {

185  "cannot open initial connection: "

<<exc.

what

());

189  "cannot open initial connection"

);

195  "cannot open initial connection: "

<<exc.

what

());

199  "cannot open initial connection"

);

222  max

= default_max_conn;

243  catch

( exception& exc ) {

245  "CReader: cannot add connection: "

<<exc.what());

276  double

wait_seconds =

278  if

( wait_seconds > 0 ) {

280

wait_seconds<<

"s before new connection"

);

281  _TRACE

(

"CReader: waiting "

<<wait_seconds<<

282  "s before new connection"

);

293  if

( wait_seconds > 0 ) {

295

wait_seconds<<

"s before new connection"

);

296  _TRACE

(

"CReader: waiting "

<<wait_seconds<<

297  "s before new connection"

);

332  catch

( exception&

) {

386

wait_seconds<<

"s before next command"

);

387  _TRACE

(

"CReader: waiting "

<<wait_seconds<<

388  "s before next connection"

);

427  catch

( exception& exc ) {

429  "cannot reuse connection: "

<<exc.what());

435  catch

( exception& ) {

449  " GenBank connection failed: reconnecting..."

);

453  " GenBank connection too old: reconnecting..."

);

498  if

( !ids_lock.IsLoaded() ) {

500  if

( !ids_lock.IsLoaded() ) {

517  if

( !ids_lock.IsLoaded() ) {

519  if

( !ids_lock.IsLoaded() ) {

536  if

( !ids_lock.IsLoaded() ) {

538  if

( !ids_lock.IsLoaded() ) {

550  if

(

result

.IsLoadedTaxId(seq_id) ) {

570

taxid = seq->GetTaxId();

582  if

( !

result

.IsLoadedHash(seq_id) ) {

585  if

( !ids.IsLoaded() ) {

599  if

(

result

.IsLoadedLength(seq_id) ) {

619

length = seq->GetInst().GetLength();

631  if

(

result

.IsLoadedType(seq_id) ) {

651  type

.

type

= seq->GetInst().GetMol();

652  type

.sequence_found =

true

;

664  size_t count

= ids.size();

665  for

(

size_t i

= 0;

i

<

count

; ++

i

) {

670  if

( !lock.IsLoaded() ) {

673  if

( lock.IsLoaded() ) {

675  if

(

data

.IsFound() ) {

676

ret[

i

] =

data

.Get();

688  size_t count

= ids.size();

689  for

(

size_t i

= 0;

i

<

count

; ++

i

) {

712  size_t count

= ids.size();

713  for

(

size_t i

= 0;

i

<

count

; ++

i

) {

736  size_t count

= ids.size();

737  for

(

size_t i

= 0;

i

<

count

; ++

i

) {

757  size_t count

= ids.size();

758  for

(

size_t i

= 0;

i

<

count

; ++

i

) {

779  size_t count

= ids.size();

780  for

(

size_t i

= 0;

i

<

count

; ++

i

) {

790  if

(

hash

.sequence_found ) {

791

ret[

i

] =

hash

.hash;

793

known[

i

] =

hash

.hash_known;

804  size_t count

= ids.size();

805  for

(

size_t i

= 0;

i

<

count

; ++

i

) {

825  size_t count

= ids.size();

826  for

(

size_t i

= 0;

i

<

count

; ++

i

) {

849  size_t count

= ids.size();

850  for

(

size_t i

= 0;

i

<

count

; ++

i

) {

855  if

( !lock.IsLoaded() ) {

858  if

( lock.IsLoaded() ) {

868  if

( !state_lock.IsLoaded() ) {

871  if

( state_lock.IsLoaded() &&

894  if

( !src_ids.IsLoaded() ) {

909  if

( !ids.IsLoaded() ) {

913  if

( !ids.IsLoaded() ) {

927  int

loaded_count = 0;

938  if

(

info

.IsSetAnnotInfo() ) {

939  if

(

info

.GetAnnotInfo()->GetAnnotInfo().empty() ) {

941  auto

&

names

=

info

.GetAnnotInfo()->GetNamedAnnotNames();

942  if

(

names

.size() == 1 ) {

962  return

loaded_count > 0;

1009  for

(

auto

& blob_chunks : chunk_ids ) {

1031  for

(

auto

&

info

: blob_infos ) {

1038  if

(

info

.IsSetAnnotInfo() ) {

1039  if

(

info

.GetAnnotInfo()->GetAnnotInfo().empty() ) {

1041  auto

&

names

=

info

.GetAnnotInfo()->GetNamedAnnotNames();

1042  if

(

names

.size() == 1 ) {

1073  result

.SetNoBlob(blob_id, blob_state);

1101  if

( !

result

.SetLoadedBlobState(blob_id, blob_state) ) {

1105

writer->SaveBlobState(

result

, blob_id, blob_state);

1127  TRACE_SET

(

"SetAndSaveSeq_idSeq_ids("

<<seq_id<<

") state: "

<<seq_ids.

GetState

());

1131  if

( !

result

.SetLoadedSeqIds(seq_id, seq_ids) ) {

1134  TRACE_SET

(

"SetAndSaveSeq_idSeq_ids("

<<seq_id<<

") set"

);

1136

writer->SaveSeq_idSeq_ids(

result

, seq_id);

1145  if

( !

result

.SetLoadedSeqIds(seq_id, seq_ids) ) {

1149

writer->SaveSeq_idSeq_ids(

result

, seq_id);

1158  if

( !

result

.SetLoadedAccFromSeqIds(seq_id, seq_ids) ) {

1162

writer->SaveSeq_idAccVer(

result

, seq_id);

1171  if

( !

result

.SetLoadedGiFromSeqIds(seq_id, seq_ids) ) {

1175

writer->SaveSeq_idGi(

result

, seq_id);

1184  if

( !

result

.SetLoadedLabelFromSeqIds(seq_id, seq_ids) ) {

1188

writer->SaveSeq_idLabel(

result

, seq_id);

1197  if

( !

result

.SetLoadedSeqIdsFromZeroGi(seq_id, gi_lock) ) {

1201

writer->SaveSeq_idSeq_ids(

result

, seq_id);

1211  TRACE_SET

(

"SetAndSaveNoSeq_idBlob_ids("

<<seq_id<<

") from gi"

);

1212  if

( !

result

.SetLoadedBlobIdsFromZeroGi(seq_id, sel, gi_lock) ) {

1215  TRACE_SET

(

"SetAndSaveNoSeq_idBlob_ids("

<<seq_id<<

") from gi set"

);

1217

writer->SaveSeq_idBlob_ids(

result

, seq_id, sel);

1237  if

( !

result

.SetLoadedGi(seq_id, gi) ) {

1241

writer->SaveSeq_idGi(

result

, seq_id);

1250  if

( !

result

.SetLoadedAcc(seq_id, acc_id) ) {

1254

writer->SaveSeq_idAccVer(

result

, seq_id);

1261  const string

&

label

)

const 1267

writer->SaveSeq_idLabel(

result

, seq_id);

1276  if

( !

result

.SetLoadedTaxId(seq_id, taxid) ) {

1280

writer->SaveSeq_idTaxId(

result

, seq_id);

1289  if

( !

result

.SetLoadedHash(seq_id,

hash

) ) {

1293

writer->SaveSequenceHash(

result

, seq_id);

1302  if

( !

result

.SetLoadedLength(seq_id, length) ) {

1306

writer->SaveSequenceLength(

result

, seq_id);

1315  if

( !

result

.SetLoadedType(seq_id,

type

) ) {

1319

writer->SaveSequenceType(

result

, seq_id);

1330  TRACE_SET

(

"SetAndSaveSeq_idBlob_ids("

<<seq_id<<

")"

);

1334  TRACE_SET

(

"SetAndSaveSeq_idBlob_ids("

<<seq_id<<

") set"

);

1336

writer->SaveSeq_idBlob_ids(

result

, seq_id, sel);

1347  TRACE_SET

(

"SetAndSaveSeq_idBlob_ids("

<<seq_id<<

")"

);

1351  TRACE_SET

(

"SetAndSaveSeq_idBlob_ids("

<<seq_id<<

") set"

);

1353

writer->SaveSeq_idBlob_ids(

result

, seq_id, sel);

1367  TRACE_SET

(

"SetAndSaveNoSeq_idBlob_ids("

<<seq_id<<

")"

);

1371  TRACE_SET

(

"SetAndSaveNoSeq_idBlob_ids("

<<seq_id<<

") set"

);

1373

writer->SaveSeq_idBlob_ids(

result

, seq_id, sel);

1381

stream.read(

reinterpret_cast<char

*

>

(&

value

),

sizeof

(

value

));

1382  if

( stream.gcount() !=

sizeof

(

value

) ) {

1384  "cannot read value"

);

1404  "HUP is supported only by pubseqos or pubseqos2 readers"

);

1438

: m_Result(0), m_Reader(0), m_Conn(0), m_Restart(

false

)

1445  result

.ReleaseNotLoadedBlobs();

1449  result

.ClearRetryDelay();

1450  result

.m_AllocatedConnection =

this

;

1452  else if

( pconn->

m_Reader

== reader ) {

1460  result

.m_AllocatedConnection =

this

;

1464  "Only one reader can allocate connection for a result"

);

ncbi::TMaskedQueryRegions mask

const CConstRef< CBlob_id > & GetBlob_id(void) const

bool IsSetAnnotInfo(void) const

TState GetState(void) const

double GetTime(int step) const

void Init(CConfig &conf, const string &driver_name, const SAllParams &params)

static bool IsFound(const TData &data)

TData GetAccVer(void) const

static const CSeq_id_Handle & GetAcc(const TData &data)

bool IsLoadedAccVer(void) const

bool SetNoBlob_ids(const CFixedBlob_ids::TState &state, TExpirationTime expiration_time)

TData GetBlob_ids(void) const

bool SetLoadedBlob_ids(const TData &data, TExpirationTime expiration_time)

TData GetBlobState(void) const

bool IsLoadedBlob(void) const

CTSE_LoadLock & GetTSE_LoadLock(void)

bool IsLoadedGi(void) const

static bool IsFound(const TData &data)

static TGi GetGi(const TData &data)

bool IsLoadedHash(void) const

static int GetHash(const TData &data)

bool IsLoadedLabel(void) const

TData GetLabel(void) const

TData GetLength(void) const

bool IsLoadedLength(void) const

TData GetSeq_ids(void) const

void AllowIncompleteLoading()

CTSE_LoadLock & GetTSE_LoadLock(void)

bool IsLoadedTaxId(void) const

TData GetTaxId(void) const

static bool IsFound(const TData &data)

static CSeq_inst::TMol GetType(const TData &data)

bool IsLoadedType(void) const

Data loader exceptions, used by GenBank loader.

CNcbiOstrstreamToString class helps convert CNcbiOstrstream to a string Sample usage:

Base class for all object manager exceptions.

static void LoadBlob(CReaderRequestResult &result, const CBlob_Info &blob_info)

void LoadSeq_idLabel(CReaderRequestResult &result, const CSeq_id_Handle &seq_id)

void LoadSeq_idGi(CReaderRequestResult &result, const CSeq_id_Handle &seq_id)

static bool SetBlobState(size_t i, CReaderRequestResult &result, const TIds &ids, TLoaded &loaded, TStates &ret)

void LoadSequenceType(CReaderRequestResult &result, const CSeq_id_Handle &seq_id)

void LoadSequenceHash(CReaderRequestResult &result, const CSeq_id_Handle &seq_id)

void LoadBlobState(CReaderRequestResult &result, const TBlobId &blob_id)

void LoadSeq_idTaxId(CReaderRequestResult &result, const CSeq_id_Handle &seq_id)

void LoadSeq_idSeq_ids(CReaderRequestResult &result, const CSeq_id_Handle &seq_id)

void LoadBlobs(CReaderRequestResult &result, const CSeq_id_Handle &seq_id, TContentsMask mask, const SAnnotSelector *sel)

void LoadSeq_idAccVer(CReaderRequestResult &result, const CSeq_id_Handle &seq_id)

void LoadSequenceLength(CReaderRequestResult &result, const CSeq_id_Handle &seq_id)

void LoadSeq_idBlob_ids(CReaderRequestResult &result, const CSeq_id_Handle &seq_id, const SAnnotSelector *sel)

void LoadBlob(CReaderRequestResult &result, const CBlob_id &blob_id)

static bool CannotProcess(const CSeq_id_Handle &sih)

~CReaderAllocatedConnection(void)

CReaderRequestResult * m_Result

CReaderAllocatedConnection(CReaderRequestResult &result, CReader *reader)

virtual ~CReaderCacheManager(void)

CReaderCacheManager(void)

CReaderAllocatedConnection * m_AllocatedConnection

double GetRetryDelay(void) const

void ReleaseNotLoadedBlobs(void)

CDebugPrinter(TConn conn, const char *name)

CSemaphore m_NumFreeConnections

void SetPreopenConnection(bool preopen=true)

vector< CSeq_id_Handle > TSeqIds

virtual void x_DisconnectAtSlot(TConn conn, bool failed)

virtual int GetRetryCount(void) const

virtual bool LoadBlobSet(CReaderRequestResult &result, const TSeqIds &seq_ids)

virtual bool LoadHashes(CReaderRequestResult &result, const TIds &ids, TLoaded &loaded, THashes &ret, TKnown &known)

CReadDispatcher * m_Dispatcher

void SetAndSaveSeq_idAccVer(CReaderRequestResult &result, const CSeq_id_Handle &seq_id, const TSequenceAcc &acc_id) const

virtual bool LoadStates(CReaderRequestResult &result, const TIds &ids, TLoaded &loaded, TStates &ret)

virtual bool LoadSequenceHash(CReaderRequestResult &result, const CSeq_id_Handle &seq_id)

virtual bool LoadSeq_idTaxId(CReaderRequestResult &result, const CSeq_id_Handle &seq_id)

void x_ReleaseClosedConnection(TConn conn)

void SetAndSaveNoSeq_idBlob_ids(CReaderRequestResult &result, const CSeq_id_Handle &seq_id, const SAnnotSelector *sel, const CLoadLockGi &gi_lock) const

void x_RemoveConnection(void)

void OpenInitialConnection(bool force)

virtual bool LoadLabels(CReaderRequestResult &result, const TIds &ids, TLoaded &loaded, TLabels &ret)

void SetAndSaveSequenceType(CReaderRequestResult &result, const CSeq_id_Handle &seq_id, const TSequenceType &type) const

virtual void x_ConnectAtSlot(TConn conn)=0

virtual void InitializeCache(CReaderCacheManager &cache_manager, const TPluginManagerParamTree *params)

void SetAndSaveSeq_idLabelFromSeqIds(CReaderRequestResult &result, const CSeq_id_Handle &seq_id, const CLoadLockSeqIds &seq_ids) const

virtual void ConnectSucceeds(TConn conn)

virtual bool LoadTypes(CReaderRequestResult &result, const TIds &ids, TLoaded &loaded, TTypes &ret)

void SetAndSaveSeq_idGi(CReaderRequestResult &result, const CSeq_id_Handle &seq_id, const TSequenceGi &gi) const

void SetAndSaveBlobVersion(CReaderRequestResult &result, const TBlobId &blob_id, TBlobVersion version) const

virtual bool MayBeSkippedOnErrors(void) const

vector< CBlob_Info > TBlobIds

TFreeConnections m_FreeConnections

void SetAndSaveBlobState(CReaderRequestResult &result, const TBlobId &blob_id, TBlobState blob_state) const

virtual bool LoadTaxIds(CReaderRequestResult &result, const TIds &ids, TLoaded &loaded, TTaxIds &ret)

virtual void ConnectFailed(TConn conn)

void SetAndSaveNoBlob(CReaderRequestResult &result, const TBlobId &blob_id, TChunkId chunk_id, TBlobState blob_state)

static int ReadInt(CNcbiIstream &stream)

virtual bool LoadSequenceType(CReaderRequestResult &result, const CSeq_id_Handle &seq_id)

CIncreasingTime m_WaitTime

TConn x_AllocConnection(bool oldest=false)

void SetAndSaveSeq_idSeq_ids(CReaderRequestResult &result, const CSeq_id_Handle &seq_id, const CFixedSeq_ids &seq_ids) const

virtual bool LoadBlob(CReaderRequestResult &result, const CBlob_id &blob_id)=0

atomic< int > m_ConnectFailCount

void SetAndSaveSeq_idGiFromSeqIds(CReaderRequestResult &result, const CSeq_id_Handle &seq_id, const CLoadLockSeqIds &seq_ids) const

virtual bool LoadBulkIds(CReaderRequestResult &result, const TIds &ids, TLoaded &loaded, TBulkIds &ret)

virtual bool LoadSequenceLength(CReaderRequestResult &result, const CSeq_id_Handle &seq_id)

virtual bool LoadChunks(CReaderRequestResult &result, const TBlobId &blob_id, const TChunkIds &chunk_ids)

void SetAndSaveSequenceLength(CReaderRequestResult &result, const CSeq_id_Handle &seq_id, TSeqPos length) const

void SetAndSaveSeq_idTaxId(CReaderRequestResult &result, const CSeq_id_Handle &seq_id, TTaxId taxid) const

void x_ReleaseConnection(TConn conn, double retry_delay=0)

virtual void ResetCache(void)

TConn m_NextNewConnection

vector< TSeqPos > TLengths

vector< pair< TBlobId, TChunkIds > > TBlobChunkIds

virtual bool LoadGis(CReaderRequestResult &result, const TIds &ids, TLoaded &loaded, TGis &ret)

void x_AbortConnection(TConn conn, bool failed)

void SetAndSaveSeq_idLabel(CReaderRequestResult &result, const CSeq_id_Handle &seq_id, const string &label) const

virtual bool LoadAccVers(CReaderRequestResult &result, const TIds &ids, TLoaded &loaded, TIds &ret)

void x_AddConnection(void)

vector< CSeq_inst::EMol > TTypes

virtual void SetIncludeHUP(bool include_hup=true, const string &web_cookie=NcbiEmptyString)

virtual int GetMaximumConnectionsLimit(void) const

virtual bool LoadSeq_idGi(CReaderRequestResult &result, const CSeq_id_Handle &seq_id)

void SetMaximumRetryCount(int retry_count)

vector< CSeq_id_Handle > TIds

void x_ReportDisconnect(const char *reader, const char *server, TConn conn, bool failed) const

virtual bool LoadSeq_idAccVer(CReaderRequestResult &result, const CSeq_id_Handle &seq_id)

virtual void OpenConnection(TConn conn)

void SetAndSaveSeq_idBlob_ids(CReaderRequestResult &result, const CSeq_id_Handle &seq_id, const SAnnotSelector *sel, CLoadLockBlobIds &lock, const CLoadLockBlobIds &blob_ids) const

int GetMaximumConnections(void) const

virtual void WaitBeforeNewConnection(TConn conn)

virtual void x_AddConnectionSlot(TConn conn)=0

void SetAndSaveSequenceHash(CReaderRequestResult &result, const CSeq_id_Handle &seq_id, const TSequenceHash &hash) const

virtual bool LoadChunk(CReaderRequestResult &result, const TBlobId &blob_id, TChunkId chunk_id)

virtual int GetConst(const string &const_name) const

void InitParams(CConfig &conf, const string &driver_name, int default_max_conn)

vector< TChunkId > TChunkIds

virtual bool LoadLengths(CReaderRequestResult &result, const TIds &ids, TLoaded &loaded, TLengths &ret)

virtual void SetParams(const CReaderParams &params)

int SetMaximumConnections(int max)

CMutex m_ConnectionsMutex

virtual void SetNewConnectionDelayMicroSec(unsigned long micro_sec)

virtual bool LoadSeq_idBlob_ids(CReaderRequestResult &result, const CSeq_id_Handle &seq_id, const SAnnotSelector *sel)

All LoadXxx() methods should return false if there is no requested data in the reader.

bool GetPreopenConnection(void) const

void SetAndSaveSeq_idAccFromSeqIds(CReaderRequestResult &result, const CSeq_id_Handle &seq_id, const CLoadLockSeqIds &seq_ids) const

virtual bool LoadBlobs(CReaderRequestResult &result, const CSeq_id_Handle &seq_id, TContentsMask mask, const SAnnotSelector *sel)

virtual void x_RemoveConnectionSlot(TConn conn)=0

void SetAndSaveNoSeq_idSeq_ids(CReaderRequestResult &result, const CSeq_id_Handle &seq_id, TState state) const

virtual bool LoadSeq_idLabel(CReaderRequestResult &result, const CSeq_id_Handle &seq_id)

CConstRef< CBioseq_Info > FindMatchingBioseq(const CSeq_id_Handle &id) const

void SetName(const CAnnotName &name)

definition of a Culling tree

BLOB cache read/write/maintenance interface.

static CS_CONNECTION * conn

static const struct name_t names[]

unsigned int TSeqPos

Type for sequence locations and lengths.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

SStrictId_Tax::TId TTaxId

Taxon id type.

const TSeqPos kInvalidSeqPos

Define special value for invalid sequence position.

#define LOG_POST_X(err_subcode, message)

#define ERR_POST_X(err_subcode, message)

Error posting with default error code and given error subcode.

@ eDPF_DateTime

Include date and time.

TErrCode GetErrCode(void) const

Get error code.

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

void Warning(CExceptionArgs_Base &args)

virtual const char * what(void) const noexcept

Standard report (includes full backlog).

#define NCBI_RETHROW(prev_exception, exception_class, err_code, message)

Generic macro to re-throw an exception.

void Info(CExceptionArgs_Base &args)

int GetInt(const string &driver_name, const string &param_name, EErrAction on_error, int default_value, const list< string > *synonyms=NULL)

Utility function to get an integer element of parameter tree Throws an exception when mandatory param...

bool GetBool(const string &driver_name, const string &param_name, EErrAction on_error, bool default_value, const list< string > *synonyms=NULL)

Utility function to get an integer element of parameter tree Throws an exception when mandatory param...

@ eErr_NoThrow

Return default value on error.

bool IsIncludedAnyNamedAnnotAccession(void) const

check if any named annot accession is included in the search

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

IO_PREFIX::istream CNcbiIstream

Portable alias for istream.

void Wait(void)

Wait on semaphore.

void Post(unsigned int count=1)

Increment the semaphore by "count".

CTime & AddTimeSpan(const CTimeSpan &timespan)

Add specified time span.

CTime & Clear(void)

Make the time "empty",.

bool IsEmpty(void) const

Is time object empty (date and time)?

double DiffNanoSecond(const CTime &t) const

Difference in nanoseconds from specified time.

@ eCurrent

Use current time. See also CCurrentTime.

static const char label[]

const string version

version string

const GenericPointer< typename T::ValueType > T2 value

void SleepMicroSec(unsigned long mc_sec, EInterruptOnSignal onsignal=eRestartOnSignal)

#define DEFAULT_WAIT_TIME_MAX

static CIncreasingTime::SAllParams s_WaitTimeParams

#define DEFAULT_RETRY_COUNT

NCBI_DEFINE_ERR_SUBCODE_X(9)

#define DEFAULT_WAIT_TIME_MULTIPLIER

#define DEFAULT_WAIT_TIME_ERRORS

#define DEFAULT_WAIT_TIME_INCREMENT

#define DEFAULT_WAIT_TIME

#define NCBI_GBLOADER_READER_PARAM_WAIT_TIME_MAX

#define NCBI_GBLOADER_READER_PARAM_WAIT_TIME_ERRORS

#define NCBI_GBLOADER_READER_PARAM_WAIT_TIME_MULTIPLIER

#define NCBI_GBLOADER_READER_PARAM_WAIT_TIME

#define NCBI_GBLOADER_READER_PARAM_RETRY_COUNT

#define NCBI_GBLOADER_READER_PARAM2_NUM_CONN

#define NCBI_GBLOADER_READER_PARAM_PREOPEN

#define NCBI_GBLOADER_READER_PARAM_NUM_CONN

#define NCBI_GBLOADER_READER_PARAM_WAIT_TIME_INCREMENT

Better replacement of GetAccVer(), this method should be defined in data loaders, GetAccVer() is left...

Better replacement of GetGi(), this method should be defined in data loaders, GetGi() is left for com...

Better replacement of GetSequenceHash(), this method should be defined in data loaders,...

Better replacement of GetSequenceType(), this method should be defined in data loaders,...

SReaderCacheInfo(ICache &cache, ECacheType cache_type)

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