Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/read__util_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/readers/read_util.cpp Source File

vector< string >& parts )

inQuote(

);

joiner(

);

(

=0;

<

.size(); ++

) {

inQuote = inQuote ^

;

(

j=0; j < parts.size(); ++j) {

(

=0;

< parts[j].size(); ++

) {

(parts[j][

] == joiner) {

& givenId,

(string::npos == rawId.find_first_not_of(

) &&

sTrackDataClass(

);

(CAnnot_descr::Tdata::const_iterator ait = descr.begin();

ait != descr.end(); ++ait) {

(!oid.

() || oid.

() != sTrackDataClass) {

(CUser_object::TData::const_iterator fit = fields.begin();

fit != fields.end(); ++fit) {

& evidenceCodes)

vector<CTempString> fields; fields.reserve(4);

(fields.size() < 4) {

fields.push_back(

);

(fields.size() != 4) {

pErr->PatchErrorMessage(

);

(

& field: fields) {

goId = goId.substr(3);

(goId.size() > 7) {

pErr->PatchErrorMessage(

);

(goId.find_first_not_of(

) != string::npos) {

pErr->PatchErrorMessage(

);

(goId.size() < 7) {

goId =

(

) + goId;

goId = goId.substr(goId.size() - 7);

(pmId.find_first_not_of(

) != string::npos) {

pErr->PatchErrorMessage(

);

evidenceCodes = fields[3];

k_GoQuals[] = {

,

,

};

k_NumGoQuals =

(k_GoQuals) /

(

);

(qual.

())

;

(j == k_NumGoQuals) {

));

comment, goId, pmId, evidenceCodes;

feature.

().SetType().SetStr(

);

wrap.

().SetFields().push_back(new_field);

text_field->

().SetStr(

);

field.

().SetFields().push_back(text_field);

goid->

().SetStr(

);

field.

().SetFields().push_back(goid);

pubmed->

().SetStr(

);

field.

().SetFields().push_back(pubmed);

evidence->

().SetStr(

);

field.

().SetFields().push_back(evidence);

User-defined methods of the data storage class.

User-defined methods of the data storage class.

static CLineError * Create(EProblem eProblem, EDiagSev eSeverity, const std::string &strSeqId, unsigned int uLine, const std::string &strFeatureName=string(""), const std::string &strQualifierName=string(""), const std::string &strQualifierValue=string(""), const std::string &strErrorMessage=string(""), const TVecOfLines &vecOfOtherLines=TVecOfLines())

Use this because the constructor is protected.

static void Tokenize(const string &instr, const string &delim, vector< string > &tokens)

Tokenize a given string, respecting quoted substrings an atomic units.

static bool GetTrackName(const CSeq_annot &annot, string &value)

Extract track information that should be present if the data originated from a UCSC data file.

static void AddGeneOntologyTerm(CSeq_feat &feature, const CTempString &qual, const CTempString &val)

static bool GetTrackOffset(const CSeq_annot &annot, int &value)

static bool GetTrackAssembly(const CSeq_annot &annot, string &value)

static bool GetTrackValue(const CSeq_annot &annot, const string &key, string &value)

static CRef< CSeq_id > AsSeqId(const string &rawId, long flags=0, bool localInts=true)

Convert a raw ID string to a Seq-id, based in given customization flags.

@ fNumericIdsAsLocal

numeric identifiers are local IDs

@ fAllIdsAsLocal

all identifiers are local IDs

namespace ncbi::objects::

CTempString implements a light-weight string on top of a storage buffer whose lifetime management is ...

@ eProblem_InvalidQualifier

@ eProblem_QualifierBadValue

static const char * str(char *buf, int n)

@ eDiag_Error

Error message.

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static int StringToInt(const CTempString str, TStringToNumFlags flags=0, int base=10)

Convert string to int.

static list< string > & Split(const CTempString str, const CTempString delim, list< string > &arr, TSplitFlags flags=0, vector< SIZE_TYPE > *token_pos=NULL)

Split a string using specified delimiters.

static bool IsBlank(const CTempString str, SIZE_TYPE pos=0)

Check if a string is blank (has no text).

static string URLDecode(const CTempString str, EUrlDecode flag=eUrlDec_All)

URL-decode string.

static void TruncateSpacesInPlace(string &str, ETrunc where=eTrunc_Both)

Truncate whitespace in a string (in-place)

bool empty(void) const

Return true if the represented string is empty (i.e., the length is zero)

static CStringUTF8 AsUTF8(const CTempString &src, EEncoding encoding, EValidate validate=eNoValidate)

Convert into UTF8 from a C/C++ string.

static bool StartsWith(const CTempString str, const CTempString start, ECase use_case=eCase)

Check if a string starts with a specified prefix value.

static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive equality of a substring with another string.

static string & ToLower(string &str)

Convert string to lower case – string& version.

void Copy(string &dst, size_type pos, size_type len) const

Copy a substring into a string Somewhat similar to basic_string::assign()

static const size_type npos

@ fSplit_MergeDelimiters

Merge adjacent delimiters.

@ eUrlDec_Percent

Decode only XX.

static const char label[]

const TStr & GetStr(void) const

Get the variant data.

bool IsSetData(void) const

the object itself Check if a value has been assigned to Data data member.

bool IsStr(void) const

Check if variant Str is selected.

bool IsSetType(void) const

type of object within class Check if a value has been assigned to Type data member.

const TData & GetData(void) const

Get the Data member data.

bool IsStr(void) const

Check if variant Str is selected.

bool IsSetLabel(void) const

field label Check if a value has been assigned to Label data member.

const TStr & GetStr(void) const

Get the variant data.

void SetLabel(TLabel &value)

Assign a value to Label data member.

TStr & SetStr(void)

Select the variant.

const TData & GetData(void) const

Get the Data member data.

void SetData(TData &value)

Assign a value to Data data member.

const TLabel & GetLabel(void) const

Get the Label member data.

const TType & GetType(void) const

Get the Type member data.

bool IsSetData(void) const

Check if a value has been assigned to Data data member.

TId & SetId(void)

Select the variant.

vector< CRef< CUser_field > > TData

void SetExt(TExt &value)

Assign a value to Ext data member.

TGi GetGi(void) const

Get the variant data.

TLocal & SetLocal(void)

Select the variant.

bool IsGi(void) const

Check if variant Gi is selected.

const Tdata & Get(void) const

Get the member data.

const TUser & GetUser(void) const

Get the variant data.

const TDesc & GetDesc(void) const

Get the Desc member data.

bool IsSetDesc(void) const

used only for stand alone Seq-annots Check if a value has been assigned to Desc data member.

bool IsUser(void) const

Check if variant User is selected.

list< CRef< CAnnotdesc > > Tdata

const struct ncbi::grid::netcache::search::fields::KEY key

const GenericPointer< typename T::ValueType > T2 value

void sParseGeneOntologyTerm(const CTempString &qual, const CTempString &rawVal, string &comment, string &goId, string &pmId, string &evidenceCodes)

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4