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NCBI C++ ToolKit: src/app/read_blast_result/read_blast_result_lib.cpp File Reference

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Definition at line 379 of file read_blast_result_lib.cpp.

References CBioseq_set_Base::CanGetSeq_set(), CBioseq::GetParentEntry(), CSeq_entry::GetParentEntry(), CSeq_entry_Base::GetSet(), GetStringDescr(), CSeq_entry_Base::IsSeq(), CSeq_entry_Base::IsSet(), NcbiCerr, NULL, CBioseq_set_Base::SetSeq_set(), and CSeq_entry_Base::SetSet().

Referenced by CReadBlastApp::get_nucleotide_seq(), CReadBlastApp::overlaps(), CReadBlastApp::overlaps_prot_na(), and CReadBlastApp::short_proteins().

Definition at line 328 of file read_blast_result_lib.cpp.

References map_checker< Container >::end(), f, map_checker< Container >::find(), GetLocationString(), CGene_ref_Base::GetLocus_tag(), CGene_ref_Base::IsSetLocus_tag(), NcbiCerr, NcbiEndl, and CReadBlastApp::PrintDetails().

Referenced by get_my_feat_type(), CReadBlastApp::overlaps_prot_na(), and CReadBlastApp::RemoveProblems().

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