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1 #ifndef UTIL_TABLES___SCOREMAT__H 2 #define UTIL_TABLES___SCOREMAT__H 85 #define NCBI_FSM_DIM 128#define NCBI_TABLES_EXPORT
const SNCBIPackedScoreMatrix NCBISM_Pam30
const SNCBIPackedScoreMatrix NCBISM_Blosum62
int NCBISM_GetIndex(const SNCBIPackedScoreMatrix *sm, int aa)
Map a standard residue code into an index suitable for a particular packed score matrix.
const SNCBIPackedScoreMatrix NCBISM_Pam250
const SNCBIPackedScoreMatrix NCBISM_Blosum50
#define NCBI_FSM_DIM
Recommended approach: unpack and index directly.
const SNCBIPackedScoreMatrix NCBISM_Blosum80
struct SNCBIFullScoreMatrix SNCBIFullScoreMatrix
const SNCBIPackedScoreMatrix * NCBISM_GetStandardMatrix(const char *name)
TNCBIScore NCBISM_GetScore(const SNCBIPackedScoreMatrix *sm, int aa1, int aa2)
Look up an entry in a packed score matrix.
void NCBISM_Unpack(const SNCBIPackedScoreMatrix *psm, SNCBIFullScoreMatrix *fsm)
Expand a packed score matrix into an unpacked one, which callers can proceed to index directly by sta...
const SNCBIPackedScoreMatrix NCBISM_Pam70
struct SNCBIPackedScoreMatrix SNCBIPackedScoreMatrix
const SNCBIPackedScoreMatrix NCBISM_Blosum45
The standard matrices.
const SNCBIPackedScoreMatrix NCBISM_Identity
const SNCBIPackedScoreMatrix NCBISM_Blosum90
int TNCBIScore
data types
const TNCBIScore * scores
strlen(symbols) x strlen(symbols)
TNCBIScore defscore
score for unknown residues
const char * symbols
order of residues
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