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NCBI C++ ToolKit: include/algo/blast/gumbel_params/pvalues.hpp Source File

{m_GumbelParams = params;}

{

*m_GumbelParams;}

Validate(

)

;

?

:

;

Result of Gumbel parameters calculation along with diagnostic info.

Wrapper for P-values calculation.

CScorePValuesCalc(const CScorePValuesCalc &)

CScorePValuesCalc(const CConstRef< CScorePValuesOptions > &options)

Constructor.

CConstRef< CScorePValuesOptions > m_Options

CScorePValuesCalc & operator=(CScorePValuesCalc &)

CRef< CScorePValues > Run(void)

Calculate P-values.

CRef< CScorePValues > m_Result

CRef< CScorePValues > GetResult(void)

Get results of P-values calculation.

NCBI_EXCEPTION_DEFAULT(CScorePValuesException, CException)

virtual const char * GetErrCodeString(void) const

Get error code interpreted as text.

Input parameters for P-values calculation.

const CGumbelParamsResult & GetGumbelParams(void) const

Get Gumbel parameters calculation results.

Int4 GetSeq2Len(void) const

Get length of sequence 2.

void SetMaxScore(Int4 score)

Set max score for which p-values will be computed.

Int4 GetMaxScore(void) const

Get max score for which p-values will be computed.

void SetMinScore(Int4 score)

Set min score for which p-values will be computed.

Int4 GetMinScore(void) const

Get min score for which p-values will be computed.

CScorePValuesOptions & operator=(const CScorePValuesOptions &)

Forbid assignment operator.

Int4 GetSeq1Len(void) const

Get length of sequence 1.

void SetSeq2Len(Int4 len)

Set length of sequence 2.

CScorePValuesOptions(const CScorePValuesOptions &)

Forbid copy constructor.

Int4 m_MinScore

P-values will be computed for the range [m_MinScore1,m_MaxScore].

Int4 m_MaxScore

P-values will be computed for the range [m_MinScore1,m_MaxScore].

void SetSeq1Len(Int4 len)

Set length of sequence 1.

CConstRef< CGumbelParamsResult > m_GumbelParams

void SetGumbelResults(const CConstRef< CGumbelParamsResult > &params)

Set Gumbel parameters calculation results.

Results of score P-values calculation.

vector< TPValue > & SetPValues(void)

Set p-values.

const vector< TPValue > & GetPValues(void) const

Get p-values.

vector< TPValue > m_PValues

Calculated p-values.

vector< TPValue > m_Errors

Errors for calculated p-values.

const vector< TPValue > & GetErrors(void) const

Get errors for p-values calculation.

vector< TPValue > & SetErrors(void)

Set errors for p-values calculation.

TErrCode GetErrCode(void) const

Get error code.

int32_t Int4

4-byte (32-bit) signed integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.

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