Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/pubseq__gateway__utils_8cpp_source.html below:

NCBI C++ ToolKit: src/app/pubseq_gateway/server/pubseq_gateway_utils.cpp Source File

shared_ptr<CPSGS_Reply> reply)

;

(request->NeedTrace())

reply->SendTrace(

,

request->GetStartTimestamp());

(

& seq_id : seq_ids) {

seq_ids.erase(seq_id);

seq_ids.insert(make_tuple(orig_seq_id_type, orig_accession));

(request->NeedTrace())

reply->SendTrace(

,

request->GetStartTimestamp());

(seq_ids.empty()) {

;

first_seq_id = seq_ids.begin();

seq_ids.erase(*first_seq_id);

seq_ids.insert(make_tuple(orig_seq_id_type, orig_accession));

(request->NeedTrace())

reply->SendTrace(

+

,

request->GetStartTimestamp());

shared_ptr<CPSGS_Reply> reply)

(request->NeedTrace()) {

reply->SendTrace(

,

request->GetStartTimestamp());

(orig_accession.empty()) {

(

);

(!orig_name.empty()) {

type_as_str =

;

type_as_str =

;

(

+ orig_name +

+ type_as_str +

+ orig_accession +

);

severity_as_string;

(skip_reason) {

;

& processor_id,

bioseq_info_size,

reply.append(

,

);

reply.append(1,

);

& processor_id,

& processor_id,

& processor_id,

& blob_id,

blob_prop_size,

last_modified_part;

(last_modified != -1) {

.append(last_modified_part)

& processor_id,

& id2_info,

blob_prop_size)

& processor_id,

& processor_id,

& id2_info,

& processor_id,

& processor_id,

& processor_id,

& blob_id,

last_modified_part;

(last_modified != -1) {

.append(last_modified_part)

& processor_id,

& id2_info)

& processor_id,

& blob_id,

last_modified_part;

(last_modified != -1) {

.append(last_modified_part)

& processor_id,

& blob_id,

sent_mks_ago,

until_resend_mks,

last_modified_part;

(last_modified != -1) {

ago_sec = sent_mks_ago / 1000000;

ago_mks(

,

);

(ago_mks.size() < 6)

ago_mks =

+ ago_mks;

until_sec = until_resend_mks / 1000000;

until_mks(

,

);

(until_mks.size() < 6)

until_mks =

+ until_mks;

.append(last_modified_part)

& processor_id,

& blob_id,

& id2_info)

& processor_id,

& blob_id,

& id2_info,

sent_mks_ago,

until_resend_mks)

ago_sec = sent_mks_ago / 1000000;

ago_mks(

,

);

(ago_mks.size() < 6)

ago_mks =

+ ago_mks;

until_sec = until_resend_mks / 1000000;

until_mks(

,

);

(until_mks.size() < 6)

until_mks =

+ until_mks;

& processor_id,

& processor_id,

& processor_id,

& blob_id,

last_modified_part;

(last_modified != -1) {

.append(last_modified_part)

& processor_id,

& id2_info,

now = psg_clock_t::now();

mks = chrono::duration_cast<chrono::microseconds>

(now - create_timestamp).count();

reply.append(

,

);

reply.append(

,

)

reply.append(1,

)

reply.append(

,

)

reply.append(

,

)

reply.append(

,

)

& processor_id,

& progress_status)

reply.append(

,

)

.append(progress_status)

& processor_id,

& annot_name,

annotation_size)

reply.append(

,

)

reply.append(

,

)

& processor_id,

reply.append(

,

)

reply.append(

,

)

reply.append(

,

)

reply.append(

,

)

& processor_id,

reply.append(

,

)

reply.append(

,

)

& processor_id,

reply.append(

,

)

reply.append(

,

)

per_annot_result_size)

reply.append(

,

);

reply.append(

,

)

reply.append(

,

)

& processor_id,

reply.append(

,

)

reply.append(

,

)

& processor_id,

reply.append(

,

)

reply.append(

,

)

& processor_id,

reply.append(

,

)

reply.append(

,

)

reply.append(

,

)

reply.append(

,

)

& processor_id,

reply.append(

,

)

reply.append(

,

)

& processor_id,

reply.append(

,

)

reply.append(

,

)

reply.append(

,

)

reply.append(

,

)

& processor_id,

reply.append(

,

)

reply.append(

,

)

& processor_id,

& blob_id,

reply.append(

,

)

reply.append(

,

)

reply.append(

,

)

& processor_id,

& id2_info,

reply.append(

,

)

reply.append(

,

)

reply.append(

,

)

& processor_id,

reply.append(

,

)

reply.append(

,

)

m_NeedReset(!

::GetRequestContext().IsSetClientIP())

std::time_t

= chrono::system_clock::to_time_t(t_point);

chrono::milliseconds t_ms = chrono::duration_cast<chrono::milliseconds>

(t_point.time_since_epoch());

tm local_time;

localtime_r(&

, &local_time);

char_count = strftime(

, 64,

,

sprintf(&

[char_count],

, t_ms.count() % 1000);

chrono::duration_cast<chrono::microseconds>(psg_clock_t::now() - t_point).count();

chrono::duration_cast<chrono::milliseconds>(psg_clock_t::now() - t_point).count();

;

(signed_value < 0) {

=

(-signed_value);

=

(signed_value);

*pos++ =

+

% 10;

value_length = pos -

;

*pos-- = *first_digit;

*first_digit++ = temp;

}

(first_digit < pos);

value_length;

pos = ip_address.find_last_of(

);

(pos == string::npos) {

ip_address.substr(0, pos);

in_port_t client_port,

(!client_ip.empty())

->SetClientIP(client_ip);

(client_port > 0)

extra.

(

, client_port);

extra.

(

, connection_id);

status,

bytes_sent)

->SetReadOnly(

);

->SetRequestStatus(status);

->SetBytesWr(bytes_sent);

TSeqIdType GetSeqIdType() const

TVersion GetVersion() const

CBioseqInfoRecord & SetName(TName value)

CBioseqInfoRecord & SetSeqIdType(TSeqIdType value)

TAccession const & GetAccession() const

CBioseqInfoRecord & SetAccession(const TAccession &value)

~CRequestContextResetter()

CRequestContextResetter()

static const int chunk_size

The NCBI C++ standard methods for dealing with std::string.

void PrintRequestStop(void)

Print request stop message (for request-driven applications)

CDiagContext_Extra & Print(const string &name, const string &value)

The method does not print the argument, but adds it to the string.

CDiagContext & GetDiagContext(void)

Get diag context instance.

static void SetRequestContext(CRequestContext *ctx)

Shortcut to CDiagContextThreadData::GetThreadData().SetRequestContext()

void PrintRequestStart(const string &message)

Print request start message (for request-driven applications)

static const char * SeverityName(EDiagSev sev)

Get a common symbolic name for the severity levels.

EDiagSev

Severity level for the posted diagnostics.

static string HtmlEncode(const CTempString str, THtmlEncode flags=fHtmlEnc_EncodeAll)

Encode a string for HTML.

static string URLEncode(const CTempString str, EUrlEncode flag=eUrlEnc_SkipMarkChars)

URL-encode string.

static string & ToLower(string &str)

Convert string to lower case – string& version.

@ e_Gi

GenInfo Integrated Database.

chrono::system_clock::time_point time_point

const GenericPointer< typename T::ValueType > T2 value

#define PSG_ERROR(message)

#define PSG_WARNING(message)

@ ePSGS_NoValidCassMapping

psg_clock_t::time_point psg_time_point_t

EPSGS_AccessionAdjustmentResult

string GetSiteFromIP(const string &ip_address)

static string s_Processor

static string s_MetaChunk

static string s_AndId2Info

static string s_InProgress

string GetPublicCommentCompletionHeader(size_t item_id, const string &processor_id, size_t chunk_count)

string GetReplyMessageHeader(size_t msg_size, CRequestStatus::ECode status, int code, EDiagSev severity)

static string s_AndDataAndMetaChunk

static string s_AccVerHistory

static string s_AndProcessorId

static string s_AndIPGInfoItem

string GetIPGMessageHeader(size_t item_id, const string &processor_id, CRequestStatus::ECode status, int code, EDiagSev severity, size_t msg_size)

static string s_AndBlobPropItem

static string s_AndFmtJson

static string s_MessageChunk

unsigned long GetTimespanToNowMs(const psg_time_point_t &t_point)

string GetPerNamedAnnotationResultsHeader(size_t item_id, size_t per_annot_result_size)

static map< EPSGS_StartupDataState, string > s_CassStartupDataStateMsg

string SanitizeInputValue(const string &input_val)

static string s_AndMessageChunk

string GetTSEBlobChunkHeader(size_t item_id, const string &processor_id, size_t chunk_size, size_t chunk_number, int64_t id2_chunk, const string &id2_info)

string GetAccVerHistoryHeader(size_t item_id, const string &processor_id, size_t msg_size)

string GetBlobMessageHeader(size_t item_id, const string &processor_id, const string &blob_id, size_t msg_size, CRequestStatus::ECode status, int code, EDiagSev severity, CBlobRecord::TTimestamp last_modified)

static string s_DataAndMetaChunk

static string s_AndSentSecondsAgo

static string s_AndReason

static string s_FmtProtobuf

string GetBioseqMessageHeader(size_t item_id, const string &processor_id, size_t msg_size, CRequestStatus::ECode status, int code, EDiagSev severity)

long PSGToString(long signed_value, char *buf)

static string s_AndReplyItem

static string s_ReplyCompletionFixedPart

string GetBlobPropHeader(size_t item_id, const string &processor_id, const string &blob_id, size_t blob_prop_size, CBlobRecord::TTimestamp last_modified)

static string s_AndProcessorItem

static string s_AndMetaChunk

static string s_ReplyBegin

static string s_AndNAStatusItem

static string s_AndDataChunk

static string s_BlobChunk

static string s_BlobPropItem

static string s_NAStatusItem

static string s_AndLastModified

string GetNamedAnnotationMessageHeader(size_t item_id, const string &processor_id, size_t msg_size, CRequestStatus::ECode status, int code, EDiagSev severity)

string GetReplyCompletionHeader(size_t chunk_count, CRequestStatus::ECode status, const psg_time_point_t &create_timestamp)

string GetBlobPropMessageHeader(size_t item_id, const string &processor_id, size_t msg_size, CRequestStatus::ECode status, int code, EDiagSev severity)

static string s_DataChunk

static string SkipReasonToString(EPSGS_BlobSkipReason skip_reason)

string GetBioseqInfoHeader(size_t item_id, const string &processor_id, size_t bioseq_info_size, SPSGS_ResolveRequest::EPSGS_OutputFormat output_format)

static string s_IPGInfoItem

static string s_MessageAndMetaChunk

static string s_AndBlobId

static string s_BioseqInfo

static string s_ProcessorItem

string FormatPreciseTime(const chrono::system_clock::time_point &t_point)

string GetPerNAResultsCompletionHeader(size_t item_id, size_t chunk_count)

string GetTSEBlobPropMessageHeader(size_t item_id, const string &processor_id, int64_t id2_chunk, const string &id2_info, size_t msg_size, CRequestStatus::ECode status, int code, EDiagSev severity)

string GetNamedAnnotationCompletionHeader(size_t item_id, const string &processor_id, size_t chunk_count)

static string s_ReplyItem

string GetTSEBlobPropCompletionHeader(size_t item_id, const string &processor_id, size_t chunk_count)

string GetBlobCompletionHeader(size_t item_id, const string &processor_id, size_t chunk_count)

static string s_AndBioseqNAItem

static string s_LastModified

unsigned long GetTimespanToNowMks(const psg_time_point_t &t_point)

static string s_AndFmtProtobuf

static string s_AndMessageAndMetaChunk

string GetNamedAnnotationHeader(size_t item_id, const string &processor_id, const string &annot_name, size_t annotation_size)

static string s_AndBioseqInfoItemAndDataChunkAndSize

string GetPublicCommentHeader(size_t item_id, const string &processor_id, const string &blob_id, CBlobRecord::TTimestamp last_modified, size_t msg_size)

static string s_AccVerHistoryItem

static string s_AndNChunksOne

static string s_BioseqInfoItem

static string s_ProcessorId

static string s_AndBlobChunk

void DismissErrorRequestContext(CRef< CRequestContext > &context, int status, size_t bytes_sent)

static string SeverityToLowerString(EDiagSev severity)

string GetProcessorMessageCompletionHeader(size_t item_id, const string &processor_id, size_t chunk_count)

string GetBlobChunkHeader(size_t item_id, const string &processor_id, const string &blob_id, size_t chunk_size, size_t chunk_number, CBlobRecord::TTimestamp last_modified)

static string s_AndProgress

static string s_AndBlobItem

static string s_ProtocolPrefix

static string s_DataAndMeta

string GetIPGResolveHeader(size_t item_id, const string &processor_id, size_t msg_size)

static string s_SentSecondsAgo

string GetTSEBlobExcludeHeader(size_t item_id, const string &processor_id, const string &blob_id, EPSGS_BlobSkipReason skip_reason, int64_t id2_chunk, const string &id2_info)

string GetBioseqCompletionHeader(size_t item_id, const string &processor_id, size_t chunk_count)

string GetAccVerHistCompletionHeader(size_t item_id, const string &processor_id, size_t chunk_count)

static string s_AndTimeUntilResend

static string s_AndPublicCommentItem

string GetCassStartupDataStateMessage(EPSGS_StartupDataState state)

static string s_BioseqNAItem

string GetNamedAnnotationMessageCompletionHeader(size_t item_id, const string &processor_id, size_t chunk_count)

static string s_TimeUntilResend

CRef< CRequestContext > CreateErrorRequestContext(const string &client_ip, in_port_t client_port, int64_t connection_id)

static string s_MessageAndMeta

string GetProcessorMessageHeader(size_t item_id, const string &processor_id, size_t msg_size, CRequestStatus::ECode status, int code, EDiagSev severity)

string GetTSEBlobCompletionHeader(size_t item_id, const string &processor_id, size_t chunk_count)

string GetBlobPropCompletionHeader(size_t item_id, const string &processor_id, size_t chunk_count)

static string s_AndId2Chunk

static string s_ChunkType

static string s_AndNChunks

static string s_AndExecTime

static string s_AndBioseqInfoItem

string GetBlobExcludeHeader(size_t item_id, const string &processor_id, const string &blob_id, EPSGS_BlobSkipReason skip_reason, CBlobRecord::TTimestamp last_modified)

static string s_AndStatus

string GetTSEBlobMessageHeader(size_t item_id, const string &processor_id, int64_t id2_chunk, const string &id2_info, size_t msg_size, CRequestStatus::ECode status, int code, EDiagSev severity)

static string s_AndSeverity

static string s_PublicComment

static string s_PublicCommentItem

static string s_AndAccVerHistoryItem

static string s_NChunksOne

string GetTSEBlobPropHeader(size_t item_id, const string &processor_id, int64_t id2_chunk, const string &id2_info, size_t blob_prop_size)

string GetProcessorProgressMessageHeader(size_t item_id, const string &processor_id, const string &progress_status)

EPSGS_AccessionAdjustmentResult AdjustAccession(shared_ptr< CPSGS_Request > request, shared_ptr< CPSGS_Reply > reply)

EPSGS_ResolutionResult m_ResolutionResult

EPSGS_AccessionAdjustmentResult m_AccessionAdjustmentResult

CBioseqInfoRecord m_BioseqInfo

bool AdjustName(shared_ptr< CPSGS_Request > request, shared_ptr< CPSGS_Reply > reply)

static CS_CONTEXT * context

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4