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NCBI C++ ToolKit: src/objtools/writers/psl_writer.cpp Source File

uFlags) :

uFlags) :

& descr)

);

,

);

(

& pAlign:

) {

formatter.

(record);

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

void Format(const CPslRecord &record)

void Initialize(CScope &scope, const CSpliced_seg &splicedSeg)

bool WriteAlign(const CSeq_align &align, const string &name="", const string &descr="") override

Write a raw Seq-align to the internal output stream.

bool WriteAnnot(const CSeq_annot &annot, const string &name="", const string &descr="") override

Write a raw Seq-annot to the internal output stream.

CPslWriter(CScope &scope, CNcbiOstream &ostr, unsigned int uFlags)

Defines and provides stubs for a general interface to a variety of file formatters.

virtual bool WriteAnnot(const CSeq_annot &, const string &="", const string &="")

Write a raw Seq-annot to the internal output stream.

CWriterListener * mpMessageListener

virtual void PutMessage(const CWriterMessage &message)

unique_ptr< CGenbankIdResolve > mpIdResolve

@ eDiag_Error

Error message.

@ eDiag_Fatal

Fatal error – guarantees exit(or abort)

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

const string & GetMsg(void) const

Get message string.

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

IO_PREFIX::ostream CNcbiOstream

Portable alias for ostream.

const TDenseg & GetDenseg(void) const

Get the variant data.

E_Choice Which(void) const

Which variant is currently selected.

bool CanGetScore(void) const

Check if it is safe to call GetScore method.

const TSpliced & GetSpliced(void) const

Get the variant data.

const TScore & GetScore(void) const

Get the Score member data.

const TDisc & GetDisc(void) const

Get the variant data.

const Tdata & Get(void) const

Get the member data.

const TSegs & GetSegs(void) const

Get the Segs member data.

const TAlign & GetAlign(void) const

Get the variant data.

const TData & GetData(void) const

Get the Data member data.

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