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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/psl__reader_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/readers/psl_reader.cpp Source File

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& aligns = annot.

().SetAlign();

(

line: readerData) {

aligns.push_back(pSeqAlign);

void Initialize(const CPslReader::TReaderLine &)

void ExportToSeqAlign(CPslReader::SeqIdResolver, CSeq_align &seqAlign)

void xProcessData(const TReaderData &, CSeq_annot &)

CPslReader(TReaderFlags flags, const string &name="", const string &title="", SeqIdResolver seqResolver=CReadUtil::AsSeqId, CReaderListener *pListener=nullptr)

Defines and provides stubs for a general interface to a variety of file readers.

unique_ptr< CReaderMessageHandler > m_pMessageHandler

SeqIdResolver mSeqIdResolve

vector< TReaderLine > TReaderData

Include a standard set of the NCBI C++ Toolkit most basic headers.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

void SetData(TData &value)

Assign a value to Data data member.

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