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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/psgs__request_8cpp_source.html below:

NCBI C++ ToolKit: src/app/pubseq_gateway/server/psgs_request.cpp Source File

m_ConcurrentProcessorCount(0)

(it.second->m_State) {

(

);

(

);

it.second->m_WaitObject.notify_all();

unique_ptr<SPSGS_RequestBase> req,

m_HttpRequest(http_request),

m_Request(std::move(req)),

m_RequestContext(request_context),

m_ConcurrentProcessorCount(0)

);

it =

.find(event_name);

(it ==

.end()) {

(it->second->m_State) {

it->second->m_WaitCount = 0;

it->second->m_WaitObject.notify_all();

it =

.find(event_name);

(it ==

.end()) {

(it->second->m_State) {

++it->second->m_WaitCount;

status = it->second->m_WaitObject.wait_for(scope_lock,

chrono::seconds(timeout_sec));

(status == cv_status::timeout) {

(--it->second->m_WaitCount == 0)

message =

+ to_string(timeout_sec) +

+ event_name +

;

);

);

);

GetRequest<SPSGS_BlobRequestBase>().m_IncludeHUP;

GetRequest<SPSGS_TSEChunkRequest>().m_IncludeHUP;

optional<bool>();

);

GetRequest<SPSGS_ResolveRequest>().m_Hops;

GetRequest<SPSGS_BlobRequestBase>().m_Hops;

GetRequest<SPSGS_TSEChunkRequest>().m_Hops;

GetRequest<SPSGS_AccessionVersionHistoryRequest>().m_Hops;

);

;

+=

+ item.first +

+ to_string(item.second);

now = psg_clock_t::now();

mks = chrono::duration_cast<chrono::microseconds>

json.

(

, enabled_procs);

json.

(

, disabled_procs);

json.

(

, exclude_blobs);

(

& name :

) {

.AppendString(name);

(

& seq_id :

) {

json.

(

, seq_ids);

json.

(

,

);

json.

(

,

);

(item.second == name) {

ret =

(ret, item.first);

(item.first >= priority) {

it = find(ret.begin(), ret.end(), item.second);

(it != ret.end()) {

(item.second == annot_name)

vector<pair<TProcessorPriority, string>>

(it->second <

(rs)) {

it->second =

(rs);

(it->first == priority && it->second ==

[0]) {

(it->second <

(rs)) {

it->second =

(rs);

static CJsonNode NewArrayNode()

Create a new JSON array node.

void SetString(const string &key, const string &value)

Set a JSON object element to the specified string value.

void AppendString(const string &value)

For an array node, add a string node at the end of the array.

void SetBoolean(const string &key, bool value)

Set a JSON object element to the specified boolean value.

void SetInteger(const string &key, Int8 value)

Set a JSON object element to the specified integer value.

void SetByKey(const string &key, CJsonNode::TInstance value)

For a JSON object node, insert a new element or update an existing element.

static CJsonNode NewObjectNode()

Create a new JSON object node.

void WaitFor(const string &event_name, size_t timeout_sec=10)

void Lock(const string &event_name)

map< string, SWaitData * > m_Wait

void SetRequestContext(void)

optional< bool > GetIncludeHUP(void)

virtual CJsonNode Serialize(void) const

CRef< CRequestContext > GetRequestContext(void)

EPSGS_Type GetRequestType(void) const

string GetLimitedProcessorsMessage(void)

CRef< CRequestContext > m_RequestContext

unique_ptr< SPSGS_RequestBase > m_Request

size_t m_ConcurrentProcessorCount

void Unlock(const string &event_name)

bool NeedProcessorEvents(void)

vector< pair< string, size_t > > m_LimitedProcessors

uint64_t m_BacklogTimeMks

@ ePSGS_AnnotationRequest

@ ePSGS_BlobBySatSatKeyRequest

@ ePSGS_IPGResolveRequest

@ ePSGS_AccessionVersionHistoryRequest

@ ePSGS_BlobBySeqIdRequest

psg_time_point_t GetStartTimestamp(void) const

virtual string GetName(void) const

const_iterator end() const

const_iterator find(const key_type &key) const

iterator_bool insert(const value_type &val)

The NCBI C++ standard methods for dealing with std::string.

static const struct name_t names[]

static void SetRequestContext(CRequestContext *ctx)

Shortcut to CDiagContextThreadData::GetThreadData().SetRequestContext()

static CRequestContext & GetRequestContext(void)

Shortcut to CDiagContextThreadData::GetThreadData().GetRequestContext()

CRef< CRequestContext > Clone(void) const

Copy current request context to a new one.

void SetReadOnly(bool read_only)

Switch request context to read-only mode.

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

unsigned int

A callback function used to compare two keys in a database.

size_t GetNextRequestId(void)

static atomic< bool > s_RequestIdLock(false)

static size_t s_NextRequestId

#define PSG_ERROR(message)

#define PSG_WARNING(message)

const int kUnknownPriority

psg_clock_t::time_point psg_time_point_t

long PSGToString(long signed_value, char *buf)

static SLJIT_INLINE sljit_ins msg(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

@ ePSGS_LockedSomebodyWaits

@ ePSGS_LockedNobodyWaits

virtual string GetName(void) const

virtual CJsonNode Serialize(void) const

EPSGS_CacheAndDbUse m_UseCache

TProcessorPriority RegisterProcessedName(TProcessorPriority priority, const string &name)

bool WasSent(const string &annot_name) const

map< string, int > m_ErrorAnnotations

vector< string > GetNotProcessedName(TProcessorPriority priority)

vector< pair< TProcessorPriority, string > > m_Processed

vector< pair< TProcessorPriority, string > > GetProcessedNames(void) const

vector< string > m_SeqIds

TProcessorPriority RegisterBioseqInfo(TProcessorPriority priority)

virtual string GetName(void) const

void ReportBlobError(TProcessorPriority priority, EPSGS_ResultStatus rs)

unsigned long m_ResendTimeoutMks

void ReportResultStatus(const string &annot_name, EPSGS_ResultStatus rs)

TProcessorPriority m_ProcessedBioseqInfo

virtual CJsonNode Serialize(void) const

virtual CJsonNode Serialize(void) const

virtual string GetName(void) const

CBlobRecord::TTimestamp m_LastModified

virtual CJsonNode Serialize(void) const

virtual string GetName(void) const

vector< string > m_ExcludeBlobs

unsigned long m_ResendTimeoutMks

EPSGS_AccSubstitutioOption m_AccSubstOption

EPSGS_CacheAndDbUse m_UseCache

static string TSEOptionToString(EPSGS_TSEOption option)

void AppendCommonParameters(CJsonNode &json) const

unsigned long m_SendBlobIfSmall

EPSGS_TSEOption m_TSEOption

optional< string > m_Protein

EPSGS_CacheAndDbUse m_UseCache

optional< string > m_Nucleotide

virtual CJsonNode Serialize(void) const

virtual string GetName(void) const

static string TraceToString(EPSGS_Trace trace)

static string CacheAndDbUseToString(EPSGS_CacheAndDbUse option)

vector< string > m_DisabledProcessors

vector< string > m_EnabledProcessors

static string AccSubstitutioOptionToString(EPSGS_AccSubstitutioOption option)

psg_time_point_t m_StartTimestamp

void AppendCommonParameters(CJsonNode &json) const

static string OutputFormatToString(EPSGS_OutputFormat format)

EPSGS_CacheAndDbUse m_UseCache

virtual CJsonNode Serialize(void) const

virtual string GetName(void) const

TPSGS_BioseqIncludeData m_IncludeDataFlags

EPSGS_OutputFormat m_OutputFormat

EPSGS_AccSubstitutioOption m_AccSubstOption

virtual CJsonNode Serialize(void) const

EPSGS_CacheAndDbUse m_UseCache

virtual string GetName(void) const

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