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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/psg__processors_8hpp_source.html below:

NCBI C++ ToolKit: include/objtools/data_loaders/genbank/impl/psg_processors.hpp Source File

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shared_ptr< CPSG_BioseqInfo > m_BioseqInfo

const CSeq_id_Handle & GetSeq_id() const

ostream & PrintProcessorArgs(ostream &out) const override

EPSG_Status m_BioseqInfoStatus

EProcessResult ProcessReplyFast(EPSG_Status status, const shared_ptr< CPSG_Reply > &reply) override

const char * GetProcessorName() const override

~CPSGL_BioseqInfo_Processor() override

EProcessResult ProcessItemFast(EPSG_Status status, const shared_ptr< CPSG_ReplyItem > &item) override

CFastMutex m_BioseqInfoMutex

CPSGL_BioseqInfo_Processor(const CSeq_id_Handle &seq_id, CPSGCaches *caches=nullptr)

shared_ptr< SPsgBioseqInfo > m_BioseqInfoResult

EProcessResult ProcessReplyFast(EPSG_Status status, const shared_ptr< CPSG_Reply > &reply) override

EPSG_Status m_BlobInfoStatus

shared_ptr< CPSG_BlobInfo > m_BlobInfo

ostream & PrintProcessorArgs(ostream &out) const override

const CSeq_id_Handle & GetSeq_id() const

CFastMutex m_BlobInfoMutex

EProcessResult ProcessItemFast(EPSG_Status status, const shared_ptr< CPSG_ReplyItem > &item) override

const string & GetBlob_id() const

~CPSGL_BlobInfo_Processor() override

const char * GetProcessorName() const override

CPSGL_BlobInfo_Processor(const CSeq_id_Handle &seq_id, CPSGCaches *caches=nullptr)

shared_ptr< SPsgBlobInfo > m_BlobInfoResult

CDataSource * m_DataSource

shared_ptr< CPSG_NamedAnnotStatus > m_AnnotStatus

EProcessResult ProcessReplySlow(EPSG_Status status, const shared_ptr< CPSG_Reply > &reply) override

shared_ptr< CPSG_NamedAnnotInfo > m_AnnotInfo

EProcessResult ProcessItemFast(EPSG_Status status, const shared_ptr< CPSG_ReplyItem > &item) override

CPSGL_CDDAnnot_Processor(const SCDDIds &cdd_ids, const TSeqIdSet &id_set, CDataSource *data_source, CPSGCaches *caches=nullptr)

ostream & PrintProcessorArgs(ostream &out) const override

const char * GetProcessorName() const override

shared_ptr< CPSG_BlobInfo > m_BlobInfo

EProcessResult ProcessReplyFast(EPSG_Status status, const shared_ptr< CPSG_Reply > &reply) override

shared_ptr< CPSG_BlobData > m_BlobData

vector< CSeq_id_Handle > TSeqIdSet

~CPSGL_CDDAnnot_Processor() override

EProcessResult ProcessReplyFinal() override

CPSGL_GetBlob_Processor(const CPsgBlobId &dl_blob_id, CDataSource *data_source, CPSGCaches *caches=nullptr, bool add_wgs_master=false)

~CPSGL_GetBlob_Processor() override

const string & GetBlob_id() const

ostream & PrintProcessorArgs(ostream &out) const override

EProcessResult ProcessReplyFast(EPSG_Status status, const shared_ptr< CPSG_Reply > &reply) override

EProcessResult ProcessReplySlow(EPSG_Status status, const shared_ptr< CPSG_Reply > &reply) override

const CTSE_Lock & GetTSE_Lock() const

const char * GetProcessorName() const override

CPSGL_GetChunk_Processor(CTSE_Chunk_Info &chunk, CDataSource *data_source, CPSGCaches *caches=nullptr, bool add_wgs_master=false)

void AddChunk(CTSE_Chunk_Info &chunk)

EProcessResult ProcessReplySlow(EPSG_Status status, const shared_ptr< CPSG_Reply > &reply) override

ostream & PrintProcessorArgs(ostream &out) const override

~CPSGL_GetChunk_Processor() override

const char * GetProcessorName() const override

vector< CTSE_Chunk_Info * > m_Chunks

ostream & PrintChunk(ostream &out, CTSE_Chunk_Info &chunk) const

CPSGL_Get_Processor(const CSeq_id_Handle &seq_id, CDataSource *data_source, CPSGCaches *caches=nullptr, bool add_wgs_master=false)

EProcessResult ProcessReplySlow(EPSG_Status status, const shared_ptr< CPSG_Reply > &reply) override

const CSeq_id_Handle & GetSeq_id() const

const string & GetPSGBlobId() const

CConstRef< CPsgBlobId > CreateDLBlobId(STSESlot *tse_slot) override

const shared_ptr< SPsgBioseqInfo > & GetBioseqInfoResult() const

EPSG_Status GetBioseqInfoStatus() const

EProcessResult ProcessItemFast(EPSG_Status status, const shared_ptr< CPSG_ReplyItem > &item) override

EPSG_Status m_BioseqInfoStatus

const TBioseqInfo & GetBioseqInfo() const

shared_ptr< CPSG_BioseqInfo > TBioseqInfo

EProcessResult x_PreProcessReply(EPSG_Status status, const shared_ptr< CPSG_Reply > &reply)

int GetForbiddenBlobState() const

~CPSGL_Get_Processor() override

shared_ptr< SPsgBioseqInfo > m_BioseqInfoResult

ostream & PrintProcessorArgs(ostream &out) const override

EProcessResult ProcessReplyFinal() override

const CTSE_Lock & GetTSE_Lock() const

const char * GetProcessorName() const override

CConstRef< CPsgBlobId > GetDLBlobId() const

EProcessResult ProcessReplyFast(EPSG_Status status, const shared_ptr< CPSG_Reply > &reply) override

~CPSGL_Info_Processor() override

const string & GetBlob_id() const

ostream & PrintProcessorArgs(ostream &out) const override

const CSeq_id_Handle & GetSeq_id() const

shared_ptr< SPsgBioseqInfo > m_BioseqInfoResult

EProcessResult ProcessItemFast(EPSG_Status status, const shared_ptr< CPSG_ReplyItem > &item) override

EPSG_Status m_BioseqInfoStatus

EPSG_Status m_BlobInfoStatus

shared_ptr< CPSG_BioseqInfo > m_BioseqInfo

shared_ptr< SPsgBlobInfo > m_BlobInfoResult

EProcessResult ProcessReplyFast(EPSG_Status status, const shared_ptr< CPSG_Reply > &reply) override

CPSGL_Info_Processor(const CSeq_id_Handle &seq_id, CPSGCaches *caches=nullptr)

shared_ptr< CPSG_BlobInfo > m_BlobInfo

const char * GetProcessorName() const override

EPSG_Status m_IpgTaxIdStatus

EProcessResult ProcessItemFast(EPSG_Status status, const shared_ptr< CPSG_ReplyItem > &item) override

CFastMutex m_IpgTaxIdMutex

const CSeq_id_Handle & GetSeq_id() const

CPSGL_IpgTaxId_Processor(const CSeq_id_Handle &seq_id, bool is_WP_acc, CPSGCaches *caches=nullptr)

const char * GetProcessorName() const override

EProcessResult ProcessReplyFast(EPSG_Status status, const shared_ptr< CPSG_Reply > &reply) override

~CPSGL_IpgTaxId_Processor() override

ostream & PrintProcessorArgs(ostream &out) const override

EProcessResult ProcessReplySlow(EPSG_Status status, const shared_ptr< CPSG_Reply > &reply) override

CPSGL_LocalCDDBlob_Processor(CTSE_Chunk_Info &cdd_chunk_info, const SCDDIds &cdd_ids, CDataSource *data_source, CPSGCaches *caches=nullptr, bool add_wgs_master=false)

~CPSGL_LocalCDDBlob_Processor() override

CConstRef< CPsgBlobId > CreateDLBlobId(STSESlot *tse_slot) override

ostream & PrintProcessorArgs(ostream &out) const override

CFastMutex m_CDDProcessorMutex

EProcessResult ProcessItemFast(EPSG_Status status, const shared_ptr< CPSG_ReplyItem > &item) override

CTSE_Chunk_Info & m_CDDChunkInfo

const char * GetProcessorName() const override

EProcessResult ProcessItemSlow(EPSG_Status status, const shared_ptr< CPSG_ReplyItem > &item) override

const char * GetProcessorName() const override

vector< CSeq_id_Handle > TSeq_ids

pair< EPSG_Status, shared_ptr< CPSG_NamedAnnotInfo > > TAnnotInfo

CFastMutex m_NAProcessorMutex

ostream & PrintProcessorArgs(ostream &out) const override

~CPSGL_NA_Processor() override

const TAnnotInfos & GetAnnotInfos() const

vector< TAnnotInfo > TAnnotInfos

CPSGL_NA_Processor(const TSeq_ids &ids, CDataSource *data_source, CPSGCaches *caches=nullptr, bool add_wgs_master=false)

const TSeq_ids & GetSeq_ids() const

EProcessResult ProcessReplyFinal() override

EProcessResult ProcessItemFast(EPSG_Status status, const shared_ptr< CPSG_ReplyItem > &item) override

EProcessResult ProcessReplySlow(EPSG_Status status, const shared_ptr< CPSG_Reply > &reply) override

const TResults & GetResults() const

Include a standard set of the NCBI C++ Toolkit most basic headers.

std::ofstream out("events_result.xml")

main entry point for tests

SStrictId_Tax::TId TTaxId

Taxon id type.

EPSG_Status

Retrieval result.

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