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NCBI C++ ToolKit: src/objtools/pubseq_gateway/cache/psg_cache_si2csi.cpp Source File

::psg::retrieval::BioseqInfoKey

;

vector<CSI2CSIRecord> response;

(has_current) {

sec_seq_it_type{-1};

|| sec_seqid.compare(

.data<

>()) != 0

has_current =

(

.data<

>(),

.size(), sec_seq_it_type);

(has_current && (!with_type || sec_seq_it_type == request.

())) {

response.resize(response.size() + 1);

& last_record = response[response.size() - 1];

.SetSecSeqId(sec_seqid)

.SetSecSeqIdType(sec_seq_it_type);

response.resize(response.size() - 1);

vector<CSI2CSIRecord> response;

(has_current) {

sec_seq_it_type{-1};

(

(

.data<

>(),

.size(), sec_seqid, sec_seq_it_type)) {

response.resize(response.size() + 1);

& last_record = response[response.size() - 1];

.SetSecSeqId(sec_seqid)

.SetSecSeqIdType(sec_seq_it_type);

response.resize(response.size() - 1);

#define BEGIN_IDBLOB_SCOPE

unique_ptr< lmdb::env > m_Env

CLMDBReadOnlyTxn BeginReadTxn()

void Pack(string &value, TInt bytes) const

static string PackKey(const string &sec_seqid, int sec_seq_id_type)

vector< CSI2CSIRecord > Fetch(CSi2CsiFetchRequest const &request)

bool x_ExtractRecord(CSI2CSIRecord &record, lmdb::val const &value) const

vector< CSI2CSIRecord > FetchLast()

unique_ptr< lmdb::dbi, function< void(lmdb::dbi *)> > m_Dbi

~CPubseqGatewayCacheSi2Csi() override

static bool UnpackKey(const char *key, size_t key_sz, int &sec_seq_id_type)

TInt Unpack(const char *key) const

CSI2CSIRecord & SetSeqIdType(TSeqIdType value)

CSI2CSIRecord & SetGI(TGI value)

CSI2CSIRecord & SetAccession(const TAccession &value)

CSI2CSIRecord & SetVersion(TVersion value)

CSI2CSIRecord::TSecSeqIdType GetSecSeqIdType() const

CSI2CSIRecord::TSecSeqId GetSecSeqId() const

bool HasField(EFields field) const

static cursor open(MDB_txn *const txn, const MDB_dbi dbi)

Creates an LMDB cursor.

Resource class for `MDB_dbi` handles.

void close(MDB_env *const env)

Closes DB handle.

static dbi open(MDB_txn *const txn, const char *const name=nullptr, const unsigned int flags=default_flags)

Opens a database handle.

Wrapper class for `MDB_val` structures.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_SCOPE(ns)

Define a new scope.

@ MDB_LAST

Position at last key/data item.

@ MDB_NEXT

Position at next data item.

@ MDB_SET_RANGE

Position at first key greater than or equal to specified key.

@ MDB_GET_CURRENT

Return key/data at current cursor position.

const struct ncbi::grid::netcache::search::fields::KEY key

const GenericPointer< typename T::ValueType > T2 value

static const unsigned kPackedSeqIdTypeSz

static const unsigned kPackedKeyZero

CPubseqGatewayCacheUnpackBytes TUnpackBytes

BEGIN_IDBLOB_SCOPE USING_NCBI_SCOPE

size_t PackedKeySize(size_t acc_sz)

CPubseqGatewayCachePackBytes TPackBytes

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