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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/psg__cache__bioseq__info_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/pubseq_gateway/cache/psg_cache_bioseq_info.cpp Source File

acceptable =

;

acceptable = acceptable && (gi == request.

());

acceptable = acceptable && (seq_id_type == request.

());

::psg::retrieval::BioseqInfoValue

;

(

& item :

.seq_ids()) {

seq_ids.

(make_tuple(

(item.sec_seq_id_type()), item.sec_seq_id()));

vector<CBioseqInfoRecord> response;

(has_current) {

seq_id_type{-1},

{-1};

|| accession.compare(

.data<

>()) != 0

response.resize(response.size() + 1);

& last_record = response[response.size() - 1];

.SetAccession(accession)

.SetSeqIdType(seq_id_type)

response.resize(response.size() - 1);

vector<CBioseqInfoRecord> response;

seq_id_type{-1},

{-1};

response.resize(response.size() + 1);

& last_record = response[response.size() - 1];

.SetAccession(accession)

.SetSeqIdType(seq_id_type)

response.resize(response.size() - 1);

*

,

key_sz,

&

,

& seq_id_type,

& gi)

*

,

key_sz,

& accession,

&

,

& seq_id_type,

& gi

accession.assign(

, ofs);

#define BEGIN_IDBLOB_SCOPE

CBioseqInfoRecord::TSeqIdType GetSeqIdType() const

CBioseqInfoRecord::TAccession GetAccession() const

CBioseqInfoRecord::TVersion GetVersion() const

CBioseqInfoRecord::TGI GetGI() const

bool HasField(EFields field) const

CBioseqInfoRecord & SetDateChanged(TDateChanged value)

CBioseqInfoRecord & SetSat(TSat value)

CBioseqInfoRecord & SetName(TName value)

CBioseqInfoRecord & SetLength(TLength value)

CBioseqInfoRecord & SetTaxId(TTaxId value)

CBioseqInfoRecord & SetSatKey(TSatKey value)

CBioseqInfoRecord & SetSeqIds(TSeqIds const &value)

CBioseqInfoRecord & SetState(TState value)

CBioseqInfoRecord & SetMol(TMol value)

CBioseqInfoRecord & SetSeqState(TSeqState value)

CBioseqInfoRecord & SetHash(THash value)

unique_ptr< lmdb::env > m_Env

CLMDBReadOnlyTxn BeginReadTxn()

unique_ptr< lmdb::dbi, function< void(lmdb::dbi *)> > m_Dbi

~CPubseqGatewayCacheBioseqInfo() override

vector< CBioseqInfoRecord > Fetch(CBioseqInfoFetchRequest const &request)

string x_MakeLookupKey(CBioseqInfoFetchRequest const &request) const

bool x_ExtractRecord(CBioseqInfoRecord &record, lmdb::val const &value) const

static string PackKey(const string &accession, int version)

bool x_IsMatchingRecord(CBioseqInfoFetchRequest const &request, int version, int seq_id_type, int64_t gi) const

static bool UnpackKey(const char *key, size_t key_sz, int &version, int &seq_id_type, int64_t &gi)

vector< CBioseqInfoRecord > FetchLast(void)

void Pack(string &value, TInt bytes) const

TInt Unpack(const char *key) const

static cursor open(MDB_txn *const txn, const MDB_dbi dbi)

Creates an LMDB cursor.

Resource class for `MDB_dbi` handles.

void close(MDB_env *const env)

Closes DB handle.

static dbi open(MDB_txn *const txn, const char *const name=nullptr, const unsigned int flags=default_flags)

Opens a database handle.

Wrapper class for `MDB_val` structures.

iterator_bool insert(const value_type &val)

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_SCOPE(ns)

Define a new scope.

@ MDB_LAST

Position at last key/data item.

@ MDB_NEXT

Position at next data item.

@ MDB_SET_RANGE

Position at first key greater than or equal to specified key.

@ MDB_GET_CURRENT

Return key/data at current cursor position.

const string version

version string

const struct ncbi::grid::netcache::search::fields::KEY key

const GenericPointer< typename T::ValueType > T2 value

static const unsigned kPackedZeroSz

static const unsigned kPackedVersionSz

static const unsigned kPackedSeqIdTypeSz

CPubseqGatewayCacheUnpackBytes TUnpackBytes

size_t PackedKeySize(size_t acc_sz)

static const unsigned kPackedGISz

CPubseqGatewayCachePackBytes TPackBytes

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